miRNA display CGI


Results 1 - 20 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24558 3' -56.1 NC_005264.1 + 14655 1.13 0.001724
Target:  5'- cCCUCGCGGCAACGGCAGAGACCAUGCu -3'
miRNA:   3'- -GGAGCGCCGUUGCCGUCUCUGGUACG- -5'
24558 3' -56.1 NC_005264.1 + 75086 0.8 0.267417
Target:  5'- uCUUCGCGGCGcuGCGGCAGGcGCCG-GCg -3'
miRNA:   3'- -GGAGCGCCGU--UGCCGUCUcUGGUaCG- -5'
24558 3' -56.1 NC_005264.1 + 157076 0.78 0.33535
Target:  5'- cCCUCGCgcagGGCAGCGGCgcauucgcggaugGGAGACUggGCc -3'
miRNA:   3'- -GGAGCG----CCGUUGCCG-------------UCUCUGGuaCG- -5'
24558 3' -56.1 NC_005264.1 + 91407 0.78 0.343632
Target:  5'- aCCggCGaGGCGGCGGCAGAGAUagcccaGUGCg -3'
miRNA:   3'- -GGa-GCgCCGUUGCCGUCUCUGg-----UACG- -5'
24558 3' -56.1 NC_005264.1 + 123305 0.78 0.343632
Target:  5'- aCCgCGgGGCGGCGGCAGAGAgCAcGUc -3'
miRNA:   3'- -GGaGCgCCGUUGCCGUCUCUgGUaCG- -5'
24558 3' -56.1 NC_005264.1 + 158748 0.78 0.343632
Target:  5'- aCCgCGgGGCGGCGGCAGAGAgCAcGUc -3'
miRNA:   3'- -GGaGCgCCGUUGCCGUCUCUgGUaCG- -5'
24558 3' -56.1 NC_005264.1 + 138595 0.77 0.366961
Target:  5'- aCUUcCGCGGCAGCGGUGGGGugCAaGUc -3'
miRNA:   3'- -GGA-GCGCCGUUGCCGUCUCugGUaCG- -5'
24558 3' -56.1 NC_005264.1 + 156593 0.77 0.391357
Target:  5'- cUCUCGCGGCGGCgucgcuGGCGGAGAacucCUcgGCg -3'
miRNA:   3'- -GGAGCGCCGUUG------CCGUCUCU----GGuaCG- -5'
24558 3' -56.1 NC_005264.1 + 125460 0.77 0.391357
Target:  5'- cUCUCGCGGCGGCgucgcuGGCGGAGAacucCUcgGCg -3'
miRNA:   3'- -GGAGCGCCGUUG------CCGUCUCU----GGuaCG- -5'
24558 3' -56.1 NC_005264.1 + 59300 0.76 0.399721
Target:  5'- --gCGCGGCAucagcgGCGGCGGccGCCAUGCu -3'
miRNA:   3'- ggaGCGCCGU------UGCCGUCucUGGUACG- -5'
24558 3' -56.1 NC_005264.1 + 57371 0.76 0.399721
Target:  5'- aCggGCGGCGcuuugcCGGCGGcAGACCAUGCg -3'
miRNA:   3'- gGagCGCCGUu-----GCCGUC-UCUGGUACG- -5'
24558 3' -56.1 NC_005264.1 + 131011 0.76 0.416786
Target:  5'- gCCgcgCGCGGC-ACGGCAGAguacgcgucacGACC-UGCg -3'
miRNA:   3'- -GGa--GCGCCGuUGCCGUCU-----------CUGGuACG- -5'
24558 3' -56.1 NC_005264.1 + 67512 0.76 0.416786
Target:  5'- uUUCGCGGCGcccgGCGGCGGcaaucuCCAUGCg -3'
miRNA:   3'- gGAGCGCCGU----UGCCGUCucu---GGUACG- -5'
24558 3' -56.1 NC_005264.1 + 151042 0.76 0.416786
Target:  5'- gCCgcgCGCGGC-ACGGCAGAguacgcgucacGACC-UGCg -3'
miRNA:   3'- -GGa--GCGCCGuUGCCGUCU-----------CUGGuACG- -5'
24558 3' -56.1 NC_005264.1 + 136854 0.76 0.425484
Target:  5'- uUUCGCGGCAcuguCGGCGG-GGCCGUugGCg -3'
miRNA:   3'- gGAGCGCCGUu---GCCGUCuCUGGUA--CG- -5'
24558 3' -56.1 NC_005264.1 + 4438 0.76 0.425484
Target:  5'- aCUCGCuGcGCGGCGGCaAGAGGCUccGCa -3'
miRNA:   3'- gGAGCG-C-CGUUGCCG-UCUCUGGuaCG- -5'
24558 3' -56.1 NC_005264.1 + 86885 0.76 0.425484
Target:  5'- uCCUCacaGGCGGCGGCcgcgauAGAGACCAcGCu -3'
miRNA:   3'- -GGAGcg-CCGUUGCCG------UCUCUGGUaCG- -5'
24558 3' -56.1 NC_005264.1 + 68501 0.75 0.461323
Target:  5'- --aCGCGGCGACGGCuuucuGGGGuACCuUGCg -3'
miRNA:   3'- ggaGCGCCGUUGCCG-----UCUC-UGGuACG- -5'
24558 3' -56.1 NC_005264.1 + 125116 0.75 0.461323
Target:  5'- gCUCGCGucGUAGCGGCGGcAGACCcgGa -3'
miRNA:   3'- gGAGCGC--CGUUGCCGUC-UCUGGuaCg -5'
24558 3' -56.1 NC_005264.1 + 156937 0.75 0.461323
Target:  5'- gCUCGCGucGUAGCGGCGGcAGACCcgGa -3'
miRNA:   3'- gGAGCGC--CGUUGCCGUC-UCUGGuaCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.