miRNA display CGI


Results 21 - 40 of 231 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24558 3' -56.1 NC_005264.1 + 84129 0.66 0.918993
Target:  5'- uUCUCGCGGCAGCucGC-GAGcCCcgGg -3'
miRNA:   3'- -GGAGCGCCGUUGc-CGuCUCuGGuaCg -5'
24558 3' -56.1 NC_005264.1 + 25740 0.66 0.918993
Target:  5'- --cCGCGGCGuUGGCGGcGACgCggGCg -3'
miRNA:   3'- ggaGCGCCGUuGCCGUCuCUG-GuaCG- -5'
24558 3' -56.1 NC_005264.1 + 6846 0.66 0.918993
Target:  5'- gCUUUGCGGCGugGCGGCGccGGCUAUa- -3'
miRNA:   3'- -GGAGCGCCGU--UGCCGUcuCUGGUAcg -5'
24558 3' -56.1 NC_005264.1 + 59249 0.66 0.918993
Target:  5'- -aUCGCGGUAGCGGCu-AGcAUCAUcaGCg -3'
miRNA:   3'- ggAGCGCCGUUGCCGucUC-UGGUA--CG- -5'
24558 3' -56.1 NC_005264.1 + 98038 0.66 0.913862
Target:  5'- gCCUCGCGGCAauuaACGGCAacucguuccugaauaAGugU-UGCa -3'
miRNA:   3'- -GGAGCGCCGU----UGCCGUc--------------UCugGuACG- -5'
24558 3' -56.1 NC_005264.1 + 22805 0.66 0.913281
Target:  5'- cCCUCG-GGCcaagacuuGGCGGC-GAGG-CGUGCa -3'
miRNA:   3'- -GGAGCgCCG--------UUGCCGuCUCUgGUACG- -5'
24558 3' -56.1 NC_005264.1 + 75932 0.66 0.913281
Target:  5'- gCCUCGCgGGUAACGcaccCAGAcuGGCCuccgGCg -3'
miRNA:   3'- -GGAGCG-CCGUUGCc---GUCU--CUGGua--CG- -5'
24558 3' -56.1 NC_005264.1 + 4875 0.66 0.913281
Target:  5'- gCUUgGCGGCAagcgacacGCGGaguucGAGGCCAcGCu -3'
miRNA:   3'- -GGAgCGCCGU--------UGCCgu---CUCUGGUaCG- -5'
24558 3' -56.1 NC_005264.1 + 93795 0.66 0.913281
Target:  5'- cCCg-GCGGCcGCGGCcaAGAGAUCGa-- -3'
miRNA:   3'- -GGagCGCCGuUGCCG--UCUCUGGUacg -5'
24558 3' -56.1 NC_005264.1 + 89973 0.66 0.913281
Target:  5'- gCCg-GCGGUAuGCGGcCAGAGACgugGCg -3'
miRNA:   3'- -GGagCGCCGU-UGCC-GUCUCUGguaCG- -5'
24558 3' -56.1 NC_005264.1 + 86146 0.66 0.912697
Target:  5'- gCCUCGUcacggugGGCGACaGCcuGGuGGCCGUGg -3'
miRNA:   3'- -GGAGCG-------CCGUUGcCG--UCuCUGGUACg -5'
24558 3' -56.1 NC_005264.1 + 92988 0.66 0.911522
Target:  5'- aCUgGCGGCcucguccucuuuagGGgGGuCGGGGACCAgggGCu -3'
miRNA:   3'- gGAgCGCCG--------------UUgCC-GUCUCUGGUa--CG- -5'
24558 3' -56.1 NC_005264.1 + 157318 0.66 0.911522
Target:  5'- ---gGCGGCGACGuucguuacgccuucGCGGAGGCCGa-- -3'
miRNA:   3'- ggagCGCCGUUGC--------------CGUCUCUGGUacg -5'
24558 3' -56.1 NC_005264.1 + 124735 0.66 0.911522
Target:  5'- ---gGCGGCGACGuucguuacgccuucGCGGAGGCCGa-- -3'
miRNA:   3'- ggagCGCCGUUGC--------------CGUCUCUGGUacg -5'
24558 3' -56.1 NC_005264.1 + 9745 0.66 0.907337
Target:  5'- aCUCgGCGGCA--GGCaAGccGCCGUGCu -3'
miRNA:   3'- gGAG-CGCCGUugCCG-UCucUGGUACG- -5'
24558 3' -56.1 NC_005264.1 + 96053 0.66 0.907337
Target:  5'- cCCagGCGGC-ACGGCA-AGACC-UGg -3'
miRNA:   3'- -GGagCGCCGuUGCCGUcUCUGGuACg -5'
24558 3' -56.1 NC_005264.1 + 119145 0.66 0.907337
Target:  5'- aCgagCGCGGCAAagggGGCgccGGAGACgAUaGCg -3'
miRNA:   3'- gGa--GCGCCGUUg---CCG---UCUCUGgUA-CG- -5'
24558 3' -56.1 NC_005264.1 + 70353 0.66 0.90673
Target:  5'- aCCUCGCaGGUAuuGCGGUAGuGaggcgccGCCGcgGCa -3'
miRNA:   3'- -GGAGCG-CCGU--UGCCGUCuC-------UGGUa-CG- -5'
24558 3' -56.1 NC_005264.1 + 135633 0.66 0.905509
Target:  5'- gCUCGCGGgaGAUGGCuauugcGAGAUCAcggaccucuggagcUGCg -3'
miRNA:   3'- gGAGCGCCg-UUGCCGu-----CUCUGGU--------------ACG- -5'
24558 3' -56.1 NC_005264.1 + 25718 0.67 0.903661
Target:  5'- gCggGCGGCAGCGGUgcguacucggucgcgGaGAGGCCAgugaUGCu -3'
miRNA:   3'- gGagCGCCGUUGCCG---------------U-CUCUGGU----ACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.