miRNA display CGI


Results 1 - 20 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24558 3' -56.1 NC_005264.1 + 788 0.67 0.874235
Target:  5'- uUCUUGCGGUAgcgcuccaguACGGCuGGGugCGcgGCc -3'
miRNA:   3'- -GGAGCGCCGU----------UGCCGuCUCugGUa-CG- -5'
24558 3' -56.1 NC_005264.1 + 1010 0.67 0.901164
Target:  5'- cCCgUGUGGUggGGgGGCAGGGGCCGuucUGUa -3'
miRNA:   3'- -GGaGCGCCG--UUgCCGUCUCUGGU---ACG- -5'
24558 3' -56.1 NC_005264.1 + 3214 0.67 0.901164
Target:  5'- uCUUCGCGuaGCcACcuaGGCuGAGACgGUGCg -3'
miRNA:   3'- -GGAGCGC--CGuUG---CCGuCUCUGgUACG- -5'
24558 3' -56.1 NC_005264.1 + 3393 0.66 0.924472
Target:  5'- cUCUCGCGuaAACuugaGCGGAacGACCAUGg -3'
miRNA:   3'- -GGAGCGCcgUUGc---CGUCU--CUGGUACg -5'
24558 3' -56.1 NC_005264.1 + 4438 0.76 0.425484
Target:  5'- aCUCGCuGcGCGGCGGCaAGAGGCUccGCa -3'
miRNA:   3'- gGAGCG-C-CGUUGCCG-UCUCUGGuaCG- -5'
24558 3' -56.1 NC_005264.1 + 4875 0.66 0.913281
Target:  5'- gCUUgGCGGCAagcgacacGCGGaguucGAGGCCAcGCu -3'
miRNA:   3'- -GGAgCGCCGU--------UGCCgu---CUCUGGUaCG- -5'
24558 3' -56.1 NC_005264.1 + 6601 0.67 0.88814
Target:  5'- gCCU-GCGGCuGGCGGCGGuGAUCGc-- -3'
miRNA:   3'- -GGAgCGCCG-UUGCCGUCuCUGGUacg -5'
24558 3' -56.1 NC_005264.1 + 6846 0.66 0.918993
Target:  5'- gCUUUGCGGCGugGCGGCGccGGCUAUa- -3'
miRNA:   3'- -GGAGCGCCGU--UGCCGUcuCUGGUAcg -5'
24558 3' -56.1 NC_005264.1 + 7764 0.73 0.547182
Target:  5'- uCCgcaGCGGCGcgggguagGCGGCGGGGACgAUGa -3'
miRNA:   3'- -GGag-CGCCGU--------UGCCGUCUCUGgUACg -5'
24558 3' -56.1 NC_005264.1 + 9745 0.66 0.907337
Target:  5'- aCUCgGCGGCA--GGCaAGccGCCGUGCu -3'
miRNA:   3'- gGAG-CGCCGUugCCG-UCucUGGUACG- -5'
24558 3' -56.1 NC_005264.1 + 9780 0.67 0.874235
Target:  5'- cCUUCG-GcGCAugGGgGGGGACUAcUGCg -3'
miRNA:   3'- -GGAGCgC-CGUugCCgUCUCUGGU-ACG- -5'
24558 3' -56.1 NC_005264.1 + 12158 0.68 0.851806
Target:  5'- aCCUgCuaGGUAACGGCuucGACCAUuGCa -3'
miRNA:   3'- -GGA-GcgCCGUUGCCGucuCUGGUA-CG- -5'
24558 3' -56.1 NC_005264.1 + 12811 0.68 0.819216
Target:  5'- gCCUCGCGGUAuagucuugcGCGGCGacGAGuaACCucGCa -3'
miRNA:   3'- -GGAGCGCCGU---------UGCCGU--CUC--UGGuaCG- -5'
24558 3' -56.1 NC_005264.1 + 13332 0.66 0.929718
Target:  5'- ---aGCGGCGuCGGgaAGAGACCGUa- -3'
miRNA:   3'- ggagCGCCGUuGCCg-UCUCUGGUAcg -5'
24558 3' -56.1 NC_005264.1 + 13956 0.67 0.88814
Target:  5'- gCCaCGCGGCGACGa-GGAGACgA-GCg -3'
miRNA:   3'- -GGaGCGCCGUUGCcgUCUCUGgUaCG- -5'
24558 3' -56.1 NC_005264.1 + 14043 0.68 0.827631
Target:  5'- uCCggaCGUGGCGGggcCGGguGGGAaCGUGCa -3'
miRNA:   3'- -GGa--GCGCCGUU---GCCguCUCUgGUACG- -5'
24558 3' -56.1 NC_005264.1 + 14389 0.72 0.657664
Target:  5'- cCCUCGCgGGCGcCGGCuGuucuGACCAccagGCa -3'
miRNA:   3'- -GGAGCG-CCGUuGCCGuCu---CUGGUa---CG- -5'
24558 3' -56.1 NC_005264.1 + 14655 1.13 0.001724
Target:  5'- cCCUCGCGGCAACGGCAGAGACCAUGCu -3'
miRNA:   3'- -GGAGCGCCGUUGCCGUCUCUGGUACG- -5'
24558 3' -56.1 NC_005264.1 + 15290 0.69 0.774812
Target:  5'- gCUUCaCGcGCAACGGCaAGGGuACCAUGa -3'
miRNA:   3'- -GGAGcGC-CGUUGCCG-UCUC-UGGUACg -5'
24558 3' -56.1 NC_005264.1 + 15732 0.67 0.881295
Target:  5'- --aCGCGGC-ACGGCGGccuGGCUugauuauguGUGCg -3'
miRNA:   3'- ggaGCGCCGuUGCCGUCu--CUGG---------UACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.