Results 1 - 20 of 231 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24558 | 3' | -56.1 | NC_005264.1 | + | 14655 | 1.13 | 0.001724 |
Target: 5'- cCCUCGCGGCAACGGCAGAGACCAUGCu -3' miRNA: 3'- -GGAGCGCCGUUGCCGUCUCUGGUACG- -5' |
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24558 | 3' | -56.1 | NC_005264.1 | + | 159043 | 0.72 | 0.644537 |
Target: 5'- aCUCGCGGaccgccacgcagauCGGCGGCGGucGACCAaggGCc -3' miRNA: 3'- gGAGCGCC--------------GUUGCCGUCu-CUGGUa--CG- -5' |
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24558 | 3' | -56.1 | NC_005264.1 | + | 73078 | 0.72 | 0.657664 |
Target: 5'- cCCgCGCGGCAucucuacuucgACGGguGGGAUCG-GCu -3' miRNA: 3'- -GGaGCGCCGU-----------UGCCguCUCUGGUaCG- -5' |
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24558 | 3' | -56.1 | NC_005264.1 | + | 149874 | 0.66 | 0.929718 |
Target: 5'- uCgUCGuCGGCGGCGGCGcGccGCCcgGUa -3' miRNA: 3'- -GgAGC-GCCGUUGCCGU-CucUGGuaCG- -5' |
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24558 | 3' | -56.1 | NC_005264.1 | + | 125460 | 0.77 | 0.391357 |
Target: 5'- cUCUCGCGGCGGCgucgcuGGCGGAGAacucCUcgGCg -3' miRNA: 3'- -GGAGCGCCGUUG------CCGUCUCU----GGuaCG- -5' |
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24558 | 3' | -56.1 | NC_005264.1 | + | 67512 | 0.76 | 0.416786 |
Target: 5'- uUUCGCGGCGcccgGCGGCGGcaaucuCCAUGCg -3' miRNA: 3'- gGAGCGCCGU----UGCCGUCucu---GGUACG- -5' |
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24558 | 3' | -56.1 | NC_005264.1 | + | 86885 | 0.76 | 0.425484 |
Target: 5'- uCCUCacaGGCGGCGGCcgcgauAGAGACCAcGCu -3' miRNA: 3'- -GGAGcg-CCGUUGCCG------UCUCUGGUaCG- -5' |
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24558 | 3' | -56.1 | NC_005264.1 | + | 125116 | 0.75 | 0.461323 |
Target: 5'- gCUCGCGucGUAGCGGCGGcAGACCcgGa -3' miRNA: 3'- gGAGCGC--CGUUGCCGUC-UCUGGuaCg -5' |
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24558 | 3' | -56.1 | NC_005264.1 | + | 25149 | 0.74 | 0.537351 |
Target: 5'- uCCUCGCGcGCGuuuGCGGCAGGGGgUGgcgggGCa -3' miRNA: 3'- -GGAGCGC-CGU---UGCCGUCUCUgGUa----CG- -5' |
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24558 | 3' | -56.1 | NC_005264.1 | + | 58006 | 0.72 | 0.637461 |
Target: 5'- gCUCaGCGGCccCGGCGGAcaGGCCgucGUGCg -3' miRNA: 3'- gGAG-CGCCGuuGCCGUCU--CUGG---UACG- -5' |
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24558 | 3' | -56.1 | NC_005264.1 | + | 158117 | 0.73 | 0.567009 |
Target: 5'- gCUCgGCgGGCAGCGGCGucuGGACCAgcUGCu -3' miRNA: 3'- gGAG-CG-CCGUUGCCGUc--UCUGGU--ACG- -5' |
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24558 | 3' | -56.1 | NC_005264.1 | + | 76134 | 0.74 | 0.498692 |
Target: 5'- --aCGCGGaCGGCGGCAaAGACCGcGCg -3' miRNA: 3'- ggaGCGCC-GUUGCCGUcUCUGGUaCG- -5' |
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24558 | 3' | -56.1 | NC_005264.1 | + | 75086 | 0.8 | 0.267417 |
Target: 5'- uCUUCGCGGCGcuGCGGCAGGcGCCG-GCg -3' miRNA: 3'- -GGAGCGCCGU--UGCCGUCUcUGGUaCG- -5' |
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24558 | 3' | -56.1 | NC_005264.1 | + | 57480 | 0.73 | 0.587014 |
Target: 5'- uCCUgGCGGCGGCGGCGaAGAUgcugGCg -3' miRNA: 3'- -GGAgCGCCGUUGCCGUcUCUGgua-CG- -5' |
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24558 | 3' | -56.1 | NC_005264.1 | + | 123305 | 0.78 | 0.343632 |
Target: 5'- aCCgCGgGGCGGCGGCAGAGAgCAcGUc -3' miRNA: 3'- -GGaGCgCCGUUGCCGUCUCUgGUaCG- -5' |
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24558 | 3' | -56.1 | NC_005264.1 | + | 68501 | 0.75 | 0.461323 |
Target: 5'- --aCGCGGCGACGGCuuucuGGGGuACCuUGCg -3' miRNA: 3'- ggaGCGCCGUUGCCG-----UCUC-UGGuACG- -5' |
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24558 | 3' | -56.1 | NC_005264.1 | + | 34810 | 0.72 | 0.60412 |
Target: 5'- --aCGCGGUAGCGcuaaugauguugcuGCAGAGGCuCAUGUa -3' miRNA: 3'- ggaGCGCCGUUGC--------------CGUCUCUG-GUACG- -5' |
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24558 | 3' | -56.1 | NC_005264.1 | + | 156616 | 0.72 | 0.647569 |
Target: 5'- gUCUCGCGGCGgccGCGGCGGGGGg----- -3' miRNA: 3'- -GGAGCGCCGU---UGCCGUCUCUgguacg -5' |
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24558 | 3' | -56.1 | NC_005264.1 | + | 138595 | 0.77 | 0.366961 |
Target: 5'- aCUUcCGCGGCAGCGGUGGGGugCAaGUc -3' miRNA: 3'- -GGA-GCGCCGUUGCCGUCUCugGUaCG- -5' |
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24558 | 3' | -56.1 | NC_005264.1 | + | 131011 | 0.76 | 0.416786 |
Target: 5'- gCCgcgCGCGGC-ACGGCAGAguacgcgucacGACC-UGCg -3' miRNA: 3'- -GGa--GCGCCGuUGCCGUCU-----------CUGGuACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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