miRNA display CGI


Results 1 - 18 of 18 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24558 5' -55.8 NC_005264.1 + 151173 0.66 0.894396
Target:  5'- -cACgcGGCCCgucgccgccacUCGCGAGCucAGAGCc -3'
miRNA:   3'- uaUGaaCCGGGa----------AGCGCUCG--UCUCGu -5'
24558 5' -55.8 NC_005264.1 + 82353 0.66 0.894396
Target:  5'- -cGCUcucGGCCUUggcgGCGaAGCGGAGCAc -3'
miRNA:   3'- uaUGAa--CCGGGAag--CGC-UCGUCUCGU- -5'
24558 5' -55.8 NC_005264.1 + 130879 0.66 0.894396
Target:  5'- -cACgcGGCCCgucgccgccacUCGCGAGCucAGAGCc -3'
miRNA:   3'- uaUGaaCCGGGa----------AGCGCUCG--UCUCGu -5'
24558 5' -55.8 NC_005264.1 + 90503 0.66 0.873173
Target:  5'- -gGCgcgUGGCgCUUUGCaucuguAGCAGAGCGu -3'
miRNA:   3'- uaUGa--ACCGgGAAGCGc-----UCGUCUCGU- -5'
24558 5' -55.8 NC_005264.1 + 3683 0.66 0.873173
Target:  5'- gGUGCggGGCCUggCGCGGaaAGGGCGc -3'
miRNA:   3'- -UAUGaaCCGGGaaGCGCUcgUCUCGU- -5'
24558 5' -55.8 NC_005264.1 + 13433 0.67 0.865644
Target:  5'- -----aGGCCCagucuacgCGCGAGCGGAGa- -3'
miRNA:   3'- uaugaaCCGGGaa------GCGCUCGUCUCgu -5'
24558 5' -55.8 NC_005264.1 + 660 0.67 0.865644
Target:  5'- -----cGuGCUCUUCGCuAGCAGAGCu -3'
miRNA:   3'- uaugaaC-CGGGAAGCGcUCGUCUCGu -5'
24558 5' -55.8 NC_005264.1 + 20225 0.67 0.857898
Target:  5'- -cGCaugUGGCCCcgCGCGugacGGguGGGCAg -3'
miRNA:   3'- uaUGa--ACCGGGaaGCGC----UCguCUCGU- -5'
24558 5' -55.8 NC_005264.1 + 8897 0.67 0.824868
Target:  5'- -aACggcGGCCacgCGCGcGCAGAGCGa -3'
miRNA:   3'- uaUGaa-CCGGgaaGCGCuCGUCUCGU- -5'
24558 5' -55.8 NC_005264.1 + 131083 0.68 0.798163
Target:  5'- -gGCUcGGCUCUgagcUCGCGAGUGGcGGCGa -3'
miRNA:   3'- uaUGAaCCGGGA----AGCGCUCGUC-UCGU- -5'
24558 5' -55.8 NC_005264.1 + 150970 0.68 0.798163
Target:  5'- -gGCUcGGCUCUgagcUCGCGAGUGGcGGCGa -3'
miRNA:   3'- uaUGAaCCGGGA----AGCGCUCGUC-UCGU- -5'
24558 5' -55.8 NC_005264.1 + 62367 0.69 0.738825
Target:  5'- ----aUGGCCCgacgggaguugCGCGAGCuAGAGCu -3'
miRNA:   3'- uaugaACCGGGaa---------GCGCUCG-UCUCGu -5'
24558 5' -55.8 NC_005264.1 + 115867 0.7 0.690223
Target:  5'- cUGCUUGGCCCacgCGaUGAGC-GAGCc -3'
miRNA:   3'- uAUGAACCGGGaa-GC-GCUCGuCUCGu -5'
24558 5' -55.8 NC_005264.1 + 159401 0.71 0.617543
Target:  5'- ----gUGGCgCUUUGCGAGCAGcGCGg -3'
miRNA:   3'- uaugaACCGgGAAGCGCUCGUCuCGU- -5'
24558 5' -55.8 NC_005264.1 + 122652 0.71 0.617543
Target:  5'- ----gUGGCgCUUUGCGAGCAGcGCGg -3'
miRNA:   3'- uaugaACCGgGAAGCGCUCGUCuCGU- -5'
24558 5' -55.8 NC_005264.1 + 58507 0.71 0.617543
Target:  5'- -aAUUUGuucCCCUUCGCGGGCAGccGGCGa -3'
miRNA:   3'- uaUGAACc--GGGAAGCGCUCGUC--UCGU- -5'
24558 5' -55.8 NC_005264.1 + 28297 0.73 0.51423
Target:  5'- gGUACUUGGCCUUcUGCGGGCGcgucuuuGAGUAu -3'
miRNA:   3'- -UAUGAACCGGGAaGCGCUCGU-------CUCGU- -5'
24558 5' -55.8 NC_005264.1 + 14692 1.06 0.003831
Target:  5'- cAUACUUGGCCCUUCGCGAGCAGAGCAc -3'
miRNA:   3'- -UAUGAACCGGGAAGCGCUCGUCUCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.