miRNA display CGI


Results 1 - 20 of 36 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24560 3' -62 NC_005264.1 + 154719 0.66 0.700751
Target:  5'- cGGGGGcaccUGCGCCGCGgCgucGCCgUCg-- -3'
miRNA:   3'- -CCCCCu---GCGCGGCGC-Ga--UGGgAGacu -5'
24560 3' -62 NC_005264.1 + 127334 0.66 0.700751
Target:  5'- cGGGGGcaccUGCGCCGCGgCgucGCCgUCg-- -3'
miRNA:   3'- -CCCCCu---GCGCGGCGC-Ga--UGGgAGacu -5'
24560 3' -62 NC_005264.1 + 19491 0.66 0.691179
Target:  5'- uGGGGGCcuGUGuCCG-GCUGCcuCCUCUGGa -3'
miRNA:   3'- cCCCCUG--CGC-GGCgCGAUG--GGAGACU- -5'
24560 3' -62 NC_005264.1 + 2900 0.66 0.671909
Target:  5'- uGGGGGCaGUGCUGCaUUGCCaUCUGGc -3'
miRNA:   3'- cCCCCUG-CGCGGCGcGAUGGgAGACU- -5'
24560 3' -62 NC_005264.1 + 19906 0.66 0.662226
Target:  5'- cGGGugcuuuguGGugGCGCCGUGCcaguaCCUCgagGAc -3'
miRNA:   3'- -CCC--------CCugCGCGGCGCGaug--GGAGa--CU- -5'
24560 3' -62 NC_005264.1 + 97550 0.66 0.652522
Target:  5'- uGGGGGAUaCGCCGCuGCUcuccCCCgUCcGAu -3'
miRNA:   3'- -CCCCCUGcGCGGCG-CGAu---GGG-AGaCU- -5'
24560 3' -62 NC_005264.1 + 61100 0.67 0.623349
Target:  5'- uGGGGAgCGCGCCGCcaagACgCUCUuGAg -3'
miRNA:   3'- cCCCCU-GCGCGGCGcga-UGgGAGA-CU- -5'
24560 3' -62 NC_005264.1 + 89424 0.67 0.623349
Target:  5'- uGGGGugGgGCCGCag-GCCUgCUGGg -3'
miRNA:   3'- cCCCCugCgCGGCGcgaUGGGaGACU- -5'
24560 3' -62 NC_005264.1 + 11723 0.68 0.584564
Target:  5'- cGGGGGGCaGCGUaCGUGUUAUCCUg--- -3'
miRNA:   3'- -CCCCCUG-CGCG-GCGCGAUGGGAgacu -5'
24560 3' -62 NC_005264.1 + 35984 0.68 0.573969
Target:  5'- aGGGGGcgcggagagcgaaACGCGCagcgacgagGCGUUGCCCgccaauacUCUGAg -3'
miRNA:   3'- -CCCCC-------------UGCGCGg--------CGCGAUGGG--------AGACU- -5'
24560 3' -62 NC_005264.1 + 142818 0.68 0.555778
Target:  5'- cGGGuGcGAgCGCGCCGUGgUagACCCUCUa- -3'
miRNA:   3'- -CCC-C-CU-GCGCGGCGCgA--UGGGAGAcu -5'
24560 3' -62 NC_005264.1 + 125161 0.68 0.555778
Target:  5'- cGGGaGGGCGaggGCCGCGC-GCCCgUCg-- -3'
miRNA:   3'- -CCC-CCUGCg--CGGCGCGaUGGG-AGacu -5'
24560 3' -62 NC_005264.1 + 156892 0.68 0.555778
Target:  5'- cGGGaGGGCGaggGCCGCGC-GCCCgUCg-- -3'
miRNA:   3'- -CCC-CCUGCg--CGGCGCGaUGGG-AGacu -5'
24560 3' -62 NC_005264.1 + 124840 0.68 0.546271
Target:  5'- uGGGGACaccuaGCGUCGCGCgGCCCg---- -3'
miRNA:   3'- cCCCCUG-----CGCGGCGCGaUGGGagacu -5'
24560 3' -62 NC_005264.1 + 157213 0.68 0.546271
Target:  5'- uGGGGACaccuaGCGUCGCGCgGCCCg---- -3'
miRNA:   3'- cCCCCUG-----CGCGGCGCGaUGGGagacu -5'
24560 3' -62 NC_005264.1 + 121157 0.68 0.536816
Target:  5'- gGGGGGGgGCaacgGCCGCGCacagACUCUUgccgGAg -3'
miRNA:   3'- -CCCCCUgCG----CGGCGCGa---UGGGAGa---CU- -5'
24560 3' -62 NC_005264.1 + 160895 0.68 0.536816
Target:  5'- gGGGGGGgGCaacgGCCGCGCacagACUCUUgccgGAg -3'
miRNA:   3'- -CCCCCUgCG----CGGCGCGa---UGGGAGa---CU- -5'
24560 3' -62 NC_005264.1 + 47290 0.68 0.536816
Target:  5'- aGGGGGCGCGgCgaGCGCUauACUCUCg-- -3'
miRNA:   3'- cCCCCUGCGCgG--CGCGA--UGGGAGacu -5'
24560 3' -62 NC_005264.1 + 117423 0.68 0.535874
Target:  5'- cGGGGcugucgcGGCGCGCaggGCGCcGCCCUCc-- -3'
miRNA:   3'- -CCCC-------CUGCGCGg--CGCGaUGGGAGacu -5'
24560 3' -62 NC_005264.1 + 385 0.69 0.526483
Target:  5'- uGGGGGGCaGCGCCGgCGCggucgugUACCUguucgcguagUCUGu -3'
miRNA:   3'- -CCCCCUG-CGCGGC-GCG-------AUGGG----------AGACu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.