miRNA display CGI


Results 21 - 36 of 36 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24560 3' -62 NC_005264.1 + 385 0.69 0.526483
Target:  5'- uGGGGGGCaGCGCCGgCGCggucgugUACCUguucgcguagUCUGu -3'
miRNA:   3'- -CCCCCUG-CGCGGC-GCG-------AUGGG----------AGACu -5'
24560 3' -62 NC_005264.1 + 87830 0.69 0.508815
Target:  5'- cGGGGGcgagauuguugACGUGCagaGgGUUugCCUCUGGc -3'
miRNA:   3'- -CCCCC-----------UGCGCGg--CgCGAugGGAGACU- -5'
24560 3' -62 NC_005264.1 + 160094 0.69 0.499617
Target:  5'- cGGGGGACGCGCCGUuaaACCUa---- -3'
miRNA:   3'- -CCCCCUGCGCGGCGcgaUGGGagacu -5'
24560 3' -62 NC_005264.1 + 121959 0.69 0.499617
Target:  5'- cGGGGGACGCGCCGUuaaACCUa---- -3'
miRNA:   3'- -CCCCCUGCGCGGCGcgaUGGGagacu -5'
24560 3' -62 NC_005264.1 + 123781 0.69 0.490493
Target:  5'- cGGGGGugGacCGCCGCGCgaacucgGCCaguccgaCUGGg -3'
miRNA:   3'- -CCCCCugC--GCGGCGCGa------UGGga-----GACU- -5'
24560 3' -62 NC_005264.1 + 158271 0.69 0.490493
Target:  5'- cGGGGGugGacCGCCGCGCgaacucgGCCaguccgaCUGGg -3'
miRNA:   3'- -CCCCCugC--GCGGCGCGa------UGGga-----GACU- -5'
24560 3' -62 NC_005264.1 + 127239 0.69 0.481447
Target:  5'- aGGGcgcGGugGCGCCGuCGUggcggGCgCCUCUGc -3'
miRNA:   3'- -CCC---CCugCGCGGC-GCGa----UG-GGAGACu -5'
24560 3' -62 NC_005264.1 + 154813 0.69 0.481447
Target:  5'- aGGGcgcGGugGCGCCGuCGUggcggGCgCCUCUGc -3'
miRNA:   3'- -CCC---CCugCGCGGC-GCGa----UG-GGAGACu -5'
24560 3' -62 NC_005264.1 + 115981 0.7 0.454814
Target:  5'- -aGGGACGCugaacgccagGCCGUGUgcgucGCCCUCUGu -3'
miRNA:   3'- ccCCCUGCG----------CGGCGCGa----UGGGAGACu -5'
24560 3' -62 NC_005264.1 + 122444 0.71 0.372285
Target:  5'- cGGGGGAgggacguagggcCGCGcCCGCGCUGCUCg---- -3'
miRNA:   3'- -CCCCCU------------GCGC-GGCGCGAUGGGagacu -5'
24560 3' -62 NC_005264.1 + 159609 0.71 0.372285
Target:  5'- cGGGGGAgggacguagggcCGCGcCCGCGCUGCUCg---- -3'
miRNA:   3'- -CCCCCU------------GCGC-GGCGCGAUGGGagacu -5'
24560 3' -62 NC_005264.1 + 131576 0.75 0.234511
Target:  5'- cGGGGGGCGUucGCCGCGaagaUACCg-CUGAg -3'
miRNA:   3'- -CCCCCUGCG--CGGCGCg---AUGGgaGACU- -5'
24560 3' -62 NC_005264.1 + 150477 0.75 0.234511
Target:  5'- cGGGGGGCGUucGCCGCGaagaUACCg-CUGAg -3'
miRNA:   3'- -CCCCCUGCG--CGGCGCg---AUGGgaGACU- -5'
24560 3' -62 NC_005264.1 + 162193 0.75 0.229154
Target:  5'- gGGGGGGCGCGUgagccucuauCGCGCUGCCUgc-GAc -3'
miRNA:   3'- -CCCCCUGCGCG----------GCGCGAUGGGagaCU- -5'
24560 3' -62 NC_005264.1 + 119860 0.75 0.229154
Target:  5'- gGGGGGGCGCGUgagccucuauCGCGCUGCCUgc-GAc -3'
miRNA:   3'- -CCCCCUGCGCG----------GCGCGAUGGGagaCU- -5'
24560 3' -62 NC_005264.1 + 16214 1.1 0.000795
Target:  5'- cGGGGGACGCGCCGCGCUACCCUCUGAg -3'
miRNA:   3'- -CCCCCUGCGCGGCGCGAUGGGAGACU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.