miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24560 5' -51.9 NC_005264.1 + 39998 0.66 0.989848
Target:  5'- -aUCUaggcGGAugcGUGCCG-CGCAUCGCCa -3'
miRNA:   3'- caAGAc---UCU---CAUGGCuGUGUAGCGGa -5'
24560 5' -51.9 NC_005264.1 + 58364 0.66 0.989848
Target:  5'- -cUCUGGcGGG-GCCGGCGCGauaugCGCCg -3'
miRNA:   3'- caAGACU-CUCaUGGCUGUGUa----GCGGa -5'
24560 5' -51.9 NC_005264.1 + 18527 0.66 0.989848
Target:  5'- uGUUCa-AGAGUGCCGAagGCGUCGUg- -3'
miRNA:   3'- -CAAGacUCUCAUGGCUg-UGUAGCGga -5'
24560 5' -51.9 NC_005264.1 + 68428 0.66 0.988447
Target:  5'- -cUCUG-GAcUACCGGCGCcgCgGCCUg -3'
miRNA:   3'- caAGACuCUcAUGGCUGUGuaG-CGGA- -5'
24560 5' -51.9 NC_005264.1 + 87531 0.67 0.981297
Target:  5'- --gUUGAGAcUACCGGgGCAcgcUCGCCg -3'
miRNA:   3'- caaGACUCUcAUGGCUgUGU---AGCGGa -5'
24560 5' -51.9 NC_005264.1 + 129093 0.67 0.981297
Target:  5'- --gCUGGGAagGCCGugGCG-CGCCg -3'
miRNA:   3'- caaGACUCUcaUGGCugUGUaGCGGa -5'
24560 5' -51.9 NC_005264.1 + 20102 0.67 0.974066
Target:  5'- ----cGAG-GUACUGGCACggCGCCa -3'
miRNA:   3'- caagaCUCuCAUGGCUGUGuaGCGGa -5'
24560 5' -51.9 NC_005264.1 + 151398 0.68 0.968234
Target:  5'- uGUUCUGGcGAGgaUGCCGGCggccgGCGUcCGCCg -3'
miRNA:   3'- -CAAGACU-CUC--AUGGCUG-----UGUA-GCGGa -5'
24560 5' -51.9 NC_005264.1 + 152957 0.68 0.968234
Target:  5'- aGggCUGGGAagGCCGugGCG-CGCCg -3'
miRNA:   3'- -CaaGACUCUcaUGGCugUGUaGCGGa -5'
24560 5' -51.9 NC_005264.1 + 130655 0.68 0.968234
Target:  5'- uGUUCUGGcGAGgaUGCCGGCggccgGCGUcCGCCg -3'
miRNA:   3'- -CAAGACU-CUC--AUGGCUG-----UGUA-GCGGa -5'
24560 5' -51.9 NC_005264.1 + 148333 0.68 0.968234
Target:  5'- -gUCUGAG-GUugCGuGCGCGgUCGCCc -3'
miRNA:   3'- caAGACUCuCAugGC-UGUGU-AGCGGa -5'
24560 5' -51.9 NC_005264.1 + 93485 0.68 0.96792
Target:  5'- -gUCUGAGGcgcugcuGgcgGCCGGCGCGUCGUUc -3'
miRNA:   3'- caAGACUCU-------Ca--UGGCUGUGUAGCGGa -5'
24560 5' -51.9 NC_005264.1 + 51948 0.68 0.957829
Target:  5'- ----cGAGGGUGCCGcuaACGCGUCGUg- -3'
miRNA:   3'- caagaCUCUCAUGGC---UGUGUAGCGga -5'
24560 5' -51.9 NC_005264.1 + 25533 0.73 0.778252
Target:  5'- cUUCUGcgauGGGUGCCGuacgccCGCGUCGCCg -3'
miRNA:   3'- cAAGACu---CUCAUGGCu-----GUGUAGCGGa -5'
24560 5' -51.9 NC_005264.1 + 7456 0.73 0.768641
Target:  5'- -aUCUGAGGGU-CCGGCGCGUCaucCCa -3'
miRNA:   3'- caAGACUCUCAuGGCUGUGUAGc--GGa -5'
24560 5' -51.9 NC_005264.1 + 16251 1.09 0.007597
Target:  5'- aGUUCUGAGAGUACCGACACAUCGCCUg -3'
miRNA:   3'- -CAAGACUCUCAUGGCUGUGUAGCGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.