miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24561 3' -54.3 NC_005264.1 + 102146 0.66 0.955772
Target:  5'- cGGGAuGACaCCGgCCAGgcGGgaCGGCg -3'
miRNA:   3'- -CUCU-CUGaGGCgGGUCauCUaaGCCG- -5'
24561 3' -54.3 NC_005264.1 + 37034 0.66 0.955772
Target:  5'- --cAGGCUCCGUgCGGgGGAcaCGGCa -3'
miRNA:   3'- cucUCUGAGGCGgGUCaUCUaaGCCG- -5'
24561 3' -54.3 NC_005264.1 + 45859 0.67 0.928365
Target:  5'- -cGAcACUCCGCCgccaUAGUAGucUCGGCc -3'
miRNA:   3'- cuCUcUGAGGCGG----GUCAUCuaAGCCG- -5'
24561 3' -54.3 NC_005264.1 + 46596 0.68 0.911415
Target:  5'- cGGAGGCUCUGUCCcugcgGGgcGAggaCGGCu -3'
miRNA:   3'- cUCUCUGAGGCGGG-----UCauCUaa-GCCG- -5'
24561 3' -54.3 NC_005264.1 + 160217 0.68 0.902765
Target:  5'- cAGaAGACUCCGCCCcgccugcUCGGCu -3'
miRNA:   3'- cUC-UCUGAGGCGGGucaucuaAGCCG- -5'
24561 3' -54.3 NC_005264.1 + 121836 0.68 0.902765
Target:  5'- cAGaAGACUCCGCCCcgccugcUCGGCu -3'
miRNA:   3'- cUC-UCUGAGGCGGGucaucuaAGCCG- -5'
24561 3' -54.3 NC_005264.1 + 122378 0.68 0.898915
Target:  5'- cGAGGGucuuucGCUCCGCUCcGUcuGGGggCGGCg -3'
miRNA:   3'- -CUCUC------UGAGGCGGGuCA--UCUaaGCCG- -5'
24561 3' -54.3 NC_005264.1 + 159675 0.68 0.898915
Target:  5'- cGAGGGucuuucGCUCCGCUCcGUcuGGGggCGGCg -3'
miRNA:   3'- -CUCUC------UGAGGCGGGuCA--UCUaaGCCG- -5'
24561 3' -54.3 NC_005264.1 + 58765 0.69 0.878417
Target:  5'- cAGAGGCgcaCGCgCGGUGG--UCGGCg -3'
miRNA:   3'- cUCUCUGag-GCGgGUCAUCuaAGCCG- -5'
24561 3' -54.3 NC_005264.1 + 10256 0.69 0.870393
Target:  5'- cGGGAGAUUCCGCCgcggcugCAGUuauGAUg-GGCu -3'
miRNA:   3'- -CUCUCUGAGGCGG-------GUCAu--CUAagCCG- -5'
24561 3' -54.3 NC_005264.1 + 136763 0.69 0.848004
Target:  5'- -cGAGGCgaagaCCaGCCCAGUgAGuccuUUCGGCg -3'
miRNA:   3'- cuCUCUGa----GG-CGGGUCA-UCu---AAGCCG- -5'
24561 3' -54.3 NC_005264.1 + 155697 0.71 0.791131
Target:  5'- cGGGAGAucccgcgucuucgucCUCCGCCUcGUcAGAcUCGGCu -3'
miRNA:   3'- -CUCUCU---------------GAGGCGGGuCA-UCUaAGCCG- -5'
24561 3' -54.3 NC_005264.1 + 126356 0.71 0.791131
Target:  5'- cGGGAGAucccgcgucuucgucCUCCGCCUcGUcAGAcUCGGCu -3'
miRNA:   3'- -CUCUCU---------------GAGGCGGGuCA-UCUaAGCCG- -5'
24561 3' -54.3 NC_005264.1 + 939 0.71 0.786534
Target:  5'- uAGGGGCUCCGCCgaAGaccauuaagcugcUAGGaUCGGCg -3'
miRNA:   3'- cUCUCUGAGGCGGg-UC-------------AUCUaAGCCG- -5'
24561 3' -54.3 NC_005264.1 + 159176 0.71 0.778171
Target:  5'- -cGAGACggCCGCCCAucGUcGAgaCGGCg -3'
miRNA:   3'- cuCUCUGa-GGCGGGU--CAuCUaaGCCG- -5'
24561 3' -54.3 NC_005264.1 + 122877 0.71 0.778171
Target:  5'- -cGAGACggCCGCCCAucGUcGAgaCGGCg -3'
miRNA:   3'- cuCUCUGa-GGCGGGU--CAuCUaaGCCG- -5'
24561 3' -54.3 NC_005264.1 + 132168 0.74 0.617917
Target:  5'- cGGcGGCgcgCCGCCCGGUAGGcaaCGGCg -3'
miRNA:   3'- cUCuCUGa--GGCGGGUCAUCUaa-GCCG- -5'
24561 3' -54.3 NC_005264.1 + 149884 0.74 0.617917
Target:  5'- cGGcGGCgcgCCGCCCGGUAGGcaaCGGCg -3'
miRNA:   3'- cUCuCUGa--GGCGGGUCAUCUaa-GCCG- -5'
24561 3' -54.3 NC_005264.1 + 69663 0.75 0.566745
Target:  5'- cAGcuGCUCCGCCCAGUcuGGAg-CGGCg -3'
miRNA:   3'- cUCucUGAGGCGGGUCA--UCUaaGCCG- -5'
24561 3' -54.3 NC_005264.1 + 18483 1.13 0.002612
Target:  5'- aGAGAGACUCCGCCCAGUAGAUUCGGCg -3'
miRNA:   3'- -CUCUCUGAGGCGGGUCAUCUAAGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.