miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24561 5' -63.5 NC_005264.1 + 149588 0.66 0.613145
Target:  5'- -cGCCGAgacgcgacgCGGcGGCGCCGaaggggCUCCUg -3'
miRNA:   3'- aaCGGCUa--------GCCcCCGCGGCa-----GAGGGg -5'
24561 5' -63.5 NC_005264.1 + 132465 0.66 0.613145
Target:  5'- -cGCCGAgacgcgacgCGGcGGCGCCGaaggggCUCCUg -3'
miRNA:   3'- aaCGGCUa--------GCCcCCGCGGCa-----GAGGGg -5'
24561 5' -63.5 NC_005264.1 + 79910 0.66 0.597674
Target:  5'- -cGCCGA-CGGGcgccaaggccgcggaGGCG-CGUCUgCCCu -3'
miRNA:   3'- aaCGGCUaGCCC---------------CCGCgGCAGAgGGG- -5'
24561 5' -63.5 NC_005264.1 + 51628 0.66 0.574583
Target:  5'- gUGCUcAUCucugaggacggaGGGGGCGaCGgcggCUCCCCg -3'
miRNA:   3'- aACGGcUAG------------CCCCCGCgGCa---GAGGGG- -5'
24561 5' -63.5 NC_005264.1 + 63296 0.66 0.574583
Target:  5'- -gGCCccaGUCGGGGGaUGCgGaCUCCCg -3'
miRNA:   3'- aaCGGc--UAGCCCCC-GCGgCaGAGGGg -5'
24561 5' -63.5 NC_005264.1 + 135199 0.66 0.574583
Target:  5'- cUGCCGA-CGgaGGGGCagacuCCGUCUCCa- -3'
miRNA:   3'- aACGGCUaGC--CCCCGc----GGCAGAGGgg -5'
24561 5' -63.5 NC_005264.1 + 132595 0.66 0.573625
Target:  5'- -gGCgGAggaggucUCGGGGGaGCCG-CgggCCCCg -3'
miRNA:   3'- aaCGgCU-------AGCCCCCgCGGCaGa--GGGG- -5'
24561 5' -63.5 NC_005264.1 + 149458 0.66 0.573625
Target:  5'- -gGCgGAggaggucUCGGGGGaGCCG-CgggCCCCg -3'
miRNA:   3'- aaCGgCU-------AGCCCCCgCGGCaGa--GGGG- -5'
24561 5' -63.5 NC_005264.1 + 66611 0.66 0.565019
Target:  5'- -cGCCGcGUUGccGGCGCCGUCgcggCCCg -3'
miRNA:   3'- aaCGGC-UAGCccCCGCGGCAGa---GGGg -5'
24561 5' -63.5 NC_005264.1 + 97556 0.67 0.555498
Target:  5'- -gGCUu-UUGGGGGauaCGCCGcugcUCUCCCCc -3'
miRNA:   3'- aaCGGcuAGCCCCC---GCGGC----AGAGGGG- -5'
24561 5' -63.5 NC_005264.1 + 129546 0.67 0.555498
Target:  5'- -cGCCGAgCGGGuccugugcGGCGCCG-C-CCUCa -3'
miRNA:   3'- aaCGGCUaGCCC--------CCGCGGCaGaGGGG- -5'
24561 5' -63.5 NC_005264.1 + 152507 0.67 0.555498
Target:  5'- -cGCCGAgCGGGuccugugcGGCGCCG-C-CCUCa -3'
miRNA:   3'- aaCGGCUaGCCC--------CCGCGGCaGaGGGG- -5'
24561 5' -63.5 NC_005264.1 + 51414 0.67 0.546024
Target:  5'- aUGgCGuacgcCGGGGaGcCGCCGUCgCCCCc -3'
miRNA:   3'- aACgGCua---GCCCC-C-GCGGCAGaGGGG- -5'
24561 5' -63.5 NC_005264.1 + 122517 0.67 0.527238
Target:  5'- -cGCCGcacgcggCGGGGGgcaggggauccuCGCCGUCcgCCUCg -3'
miRNA:   3'- aaCGGCua-----GCCCCC------------GCGGCAGa-GGGG- -5'
24561 5' -63.5 NC_005264.1 + 159536 0.67 0.527238
Target:  5'- -cGCCGcacgcggCGGGGGgcaggggauccuCGCCGUCcgCCUCg -3'
miRNA:   3'- aaCGGCua-----GCCCCC------------GCGGCAGa-GGGG- -5'
24561 5' -63.5 NC_005264.1 + 96332 0.67 0.517936
Target:  5'- -cGCCGggCgGGGGGCGUacuaCGUgUCgCCg -3'
miRNA:   3'- aaCGGCuaG-CCCCCGCG----GCAgAGgGG- -5'
24561 5' -63.5 NC_005264.1 + 97680 0.67 0.508699
Target:  5'- -cGCCucguuUCGGuGGGagcuuGCUGUCUCCCUa -3'
miRNA:   3'- aaCGGcu---AGCC-CCCg----CGGCAGAGGGG- -5'
24561 5' -63.5 NC_005264.1 + 160184 0.68 0.49044
Target:  5'- -gGCCGGUCGcGcucGCGCCGUCgCCCg -3'
miRNA:   3'- aaCGGCUAGC-Ccc-CGCGGCAGaGGGg -5'
24561 5' -63.5 NC_005264.1 + 121868 0.68 0.49044
Target:  5'- -gGCCGGUCGcGcucGCGCCGUCgCCCg -3'
miRNA:   3'- aaCGGCUAGC-Ccc-CGCGGCAGaGGGg -5'
24561 5' -63.5 NC_005264.1 + 156842 0.68 0.49044
Target:  5'- -cGCCcGUCGGGGcCGaCGaCUCCCCu -3'
miRNA:   3'- aaCGGcUAGCCCCcGCgGCaGAGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.