miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24561 5' -63.5 NC_005264.1 + 18518 1.07 0.000903
Target:  5'- cUUGCCGAUCGGGGGCGCCGUCUCCCCc -3'
miRNA:   3'- -AACGGCUAGCCCCCGCGGCAGAGGGG- -5'
24561 5' -63.5 NC_005264.1 + 19428 0.69 0.396213
Target:  5'- -cGCCGGguguggcCGcGGGGCGCgGguggguuucUCUCCCCc -3'
miRNA:   3'- aaCGGCUa------GC-CCCCGCGgC---------AGAGGGG- -5'
24561 5' -63.5 NC_005264.1 + 28018 0.73 0.240575
Target:  5'- -gGUCGGUCGGGGGCGggagGUCUUCCg -3'
miRNA:   3'- aaCGGCUAGCCCCCGCgg--CAGAGGGg -5'
24561 5' -63.5 NC_005264.1 + 37393 0.69 0.401859
Target:  5'- -aGCCGGUCGGGaguccauggagcGGCGCCGUaaaaugcgucugcggCCCa -3'
miRNA:   3'- aaCGGCUAGCCC------------CCGCGGCAga-------------GGGg -5'
24561 5' -63.5 NC_005264.1 + 51414 0.67 0.546024
Target:  5'- aUGgCGuacgcCGGGGaGcCGCCGUCgCCCCc -3'
miRNA:   3'- aACgGCua---GCCCC-C-GCGGCAGaGGGG- -5'
24561 5' -63.5 NC_005264.1 + 51628 0.66 0.574583
Target:  5'- gUGCUcAUCucugaggacggaGGGGGCGaCGgcggCUCCCCg -3'
miRNA:   3'- aACGGcUAG------------CCCCCGCgGCa---GAGGGG- -5'
24561 5' -63.5 NC_005264.1 + 54888 0.77 0.123282
Target:  5'- -cGCCGGgaUCGGGGG-GCCGUCgagCCUCg -3'
miRNA:   3'- aaCGGCU--AGCCCCCgCGGCAGa--GGGG- -5'
24561 5' -63.5 NC_005264.1 + 61364 0.78 0.108654
Target:  5'- -gGCCGucaaagcGUCGGGGuCGCgGUCUCCCCg -3'
miRNA:   3'- aaCGGC-------UAGCCCCcGCGgCAGAGGGG- -5'
24561 5' -63.5 NC_005264.1 + 63296 0.66 0.574583
Target:  5'- -gGCCccaGUCGGGGGaUGCgGaCUCCCg -3'
miRNA:   3'- aaCGGc--UAGCCCCC-GCGgCaGAGGGg -5'
24561 5' -63.5 NC_005264.1 + 66611 0.66 0.565019
Target:  5'- -cGCCGcGUUGccGGCGCCGUCgcggCCCg -3'
miRNA:   3'- aaCGGC-UAGCccCCGCGGCAGa---GGGg -5'
24561 5' -63.5 NC_005264.1 + 67223 0.68 0.472492
Target:  5'- -cGCCGcuuacGUCGGGGGCcugcgcaaggccGCCG-CUCCguCCa -3'
miRNA:   3'- aaCGGC-----UAGCCCCCG------------CGGCaGAGG--GG- -5'
24561 5' -63.5 NC_005264.1 + 72903 0.69 0.396213
Target:  5'- gUGCCGAUCGGGGGUGU-----CCCa -3'
miRNA:   3'- aACGGCUAGCCCCCGCGgcagaGGGg -5'
24561 5' -63.5 NC_005264.1 + 79910 0.66 0.597674
Target:  5'- -cGCCGA-CGGGcgccaaggccgcggaGGCG-CGUCUgCCCu -3'
miRNA:   3'- aaCGGCUaGCCC---------------CCGCgGCAGAgGGG- -5'
24561 5' -63.5 NC_005264.1 + 96104 0.68 0.454881
Target:  5'- gUUGCCG--CGGuuuaGGCGCCGgcgcuuguugCUCCCCg -3'
miRNA:   3'- -AACGGCuaGCCc---CCGCGGCa---------GAGGGG- -5'
24561 5' -63.5 NC_005264.1 + 96332 0.67 0.517936
Target:  5'- -cGCCGggCgGGGGGCGUacuaCGUgUCgCCg -3'
miRNA:   3'- aaCGGCuaG-CCCCCGCG----GCAgAGgGG- -5'
24561 5' -63.5 NC_005264.1 + 96381 0.7 0.380368
Target:  5'- -gGCCG--CGGcGGUGCCaUCUCCCCa -3'
miRNA:   3'- aaCGGCuaGCCcCCGCGGcAGAGGGG- -5'
24561 5' -63.5 NC_005264.1 + 97556 0.67 0.555498
Target:  5'- -gGCUu-UUGGGGGauaCGCCGcugcUCUCCCCc -3'
miRNA:   3'- aaCGGcuAGCCCCC---GCGGC----AGAGGGG- -5'
24561 5' -63.5 NC_005264.1 + 97680 0.67 0.508699
Target:  5'- -cGCCucguuUCGGuGGGagcuuGCUGUCUCCCUa -3'
miRNA:   3'- aaCGGcu---AGCC-CCCg----CGGCAGAGGGG- -5'
24561 5' -63.5 NC_005264.1 + 121868 0.68 0.49044
Target:  5'- -gGCCGGUCGcGcucGCGCCGUCgCCCg -3'
miRNA:   3'- aaCGGCUAGC-Ccc-CGCGGCAGaGGGg -5'
24561 5' -63.5 NC_005264.1 + 122517 0.67 0.527238
Target:  5'- -cGCCGcacgcggCGGGGGgcaggggauccuCGCCGUCcgCCUCg -3'
miRNA:   3'- aaCGGCua-----GCCCCC------------GCGGCAGa-GGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.