Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24561 | 5' | -63.5 | NC_005264.1 | + | 154967 | 0.75 | 0.186116 |
Target: 5'- -cGCCGcAUCuGGGGCGCCGaCgccgCCCCc -3' miRNA: 3'- aaCGGC-UAGcCCCCGCGGCaGa---GGGG- -5' |
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24561 | 5' | -63.5 | NC_005264.1 | + | 66611 | 0.66 | 0.565019 |
Target: 5'- -cGCCGcGUUGccGGCGCCGUCgcggCCCg -3' miRNA: 3'- aaCGGC-UAGCccCCGCGGCAGa---GGGg -5' |
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24561 | 5' | -63.5 | NC_005264.1 | + | 149458 | 0.66 | 0.573625 |
Target: 5'- -gGCgGAggaggucUCGGGGGaGCCG-CgggCCCCg -3' miRNA: 3'- aaCGgCU-------AGCCCCCgCGGCaGa--GGGG- -5' |
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24561 | 5' | -63.5 | NC_005264.1 | + | 132465 | 0.66 | 0.613145 |
Target: 5'- -cGCCGAgacgcgacgCGGcGGCGCCGaaggggCUCCUg -3' miRNA: 3'- aaCGGCUa--------GCCcCCGCGGCa-----GAGGGg -5' |
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24561 | 5' | -63.5 | NC_005264.1 | + | 19428 | 0.69 | 0.396213 |
Target: 5'- -cGCCGGguguggcCGcGGGGCGCgGguggguuucUCUCCCCc -3' miRNA: 3'- aaCGGCUa------GC-CCCCGCGgC---------AGAGGGG- -5' |
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24561 | 5' | -63.5 | NC_005264.1 | + | 132392 | 0.69 | 0.420763 |
Target: 5'- -gGCCGAgccGGGGC-CCGcggCUCCCCc -3' miRNA: 3'- aaCGGCUagcCCCCGcGGCa--GAGGGG- -5' |
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24561 | 5' | -63.5 | NC_005264.1 | + | 96104 | 0.68 | 0.454881 |
Target: 5'- gUUGCCG--CGGuuuaGGCGCCGgcgcuuguugCUCCCCg -3' miRNA: 3'- -AACGGCuaGCCc---CCGCGGCa---------GAGGGG- -5' |
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24561 | 5' | -63.5 | NC_005264.1 | + | 156842 | 0.68 | 0.49044 |
Target: 5'- -cGCCcGUCGGGGcCGaCGaCUCCCCu -3' miRNA: 3'- aaCGGcUAGCCCCcGCgGCaGAGGGG- -5' |
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24561 | 5' | -63.5 | NC_005264.1 | + | 18518 | 1.07 | 0.000903 |
Target: 5'- cUUGCCGAUCGGGGGCGCCGUCUCCCCc -3' miRNA: 3'- -AACGGCUAGCCCCCGCGGCAGAGGGG- -5' |
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24561 | 5' | -63.5 | NC_005264.1 | + | 122517 | 0.67 | 0.527238 |
Target: 5'- -cGCCGcacgcggCGGGGGgcaggggauccuCGCCGUCcgCCUCg -3' miRNA: 3'- aaCGGCua-----GCCCCC------------GCGGCAGa-GGGG- -5' |
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24561 | 5' | -63.5 | NC_005264.1 | + | 97680 | 0.67 | 0.508699 |
Target: 5'- -cGCCucguuUCGGuGGGagcuuGCUGUCUCCCUa -3' miRNA: 3'- aaCGGcu---AGCC-CCCg----CGGCAGAGGGG- -5' |
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24561 | 5' | -63.5 | NC_005264.1 | + | 28018 | 0.73 | 0.240575 |
Target: 5'- -gGUCGGUCGGGGGCGggagGUCUUCCg -3' miRNA: 3'- aaCGGCUAGCCCCCGCgg--CAGAGGGg -5' |
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24561 | 5' | -63.5 | NC_005264.1 | + | 51414 | 0.67 | 0.546024 |
Target: 5'- aUGgCGuacgcCGGGGaGcCGCCGUCgCCCCc -3' miRNA: 3'- aACgGCua---GCCCC-C-GCGGCAGaGGGG- -5' |
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24561 | 5' | -63.5 | NC_005264.1 | + | 126883 | 0.72 | 0.281757 |
Target: 5'- -cGCUaGAUugUGGGGGCGgCGUCggcgCCCCa -3' miRNA: 3'- aaCGG-CUA--GCCCCCGCgGCAGa---GGGG- -5' |
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24561 | 5' | -63.5 | NC_005264.1 | + | 121868 | 0.68 | 0.49044 |
Target: 5'- -gGCCGGUCGcGcucGCGCCGUCgCCCg -3' miRNA: 3'- aaCGGCUAGC-Ccc-CGCGGCAGaGGGg -5' |
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24561 | 5' | -63.5 | NC_005264.1 | + | 129546 | 0.67 | 0.555498 |
Target: 5'- -cGCCGAgCGGGuccugugcGGCGCCG-C-CCUCa -3' miRNA: 3'- aaCGGCUaGCCC--------CCGCGGCaGaGGGG- -5' |
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24561 | 5' | -63.5 | NC_005264.1 | + | 63296 | 0.66 | 0.574583 |
Target: 5'- -gGCCccaGUCGGGGGaUGCgGaCUCCCg -3' miRNA: 3'- aaCGGc--UAGCCCCC-GCGgCaGAGGGg -5' |
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24561 | 5' | -63.5 | NC_005264.1 | + | 96381 | 0.7 | 0.380368 |
Target: 5'- -gGCCG--CGGcGGUGCCaUCUCCCCa -3' miRNA: 3'- aaCGGCuaGCCcCCGCGGcAGAGGGG- -5' |
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24561 | 5' | -63.5 | NC_005264.1 | + | 154825 | 0.68 | 0.44621 |
Target: 5'- -cGCCGucgUGGcGGGCGCC-UCUgccggCCCCg -3' miRNA: 3'- aaCGGCua-GCC-CCCGCGGcAGA-----GGGG- -5' |
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24561 | 5' | -63.5 | NC_005264.1 | + | 61364 | 0.78 | 0.108654 |
Target: 5'- -gGCCGucaaagcGUCGGGGuCGCgGUCUCCCCg -3' miRNA: 3'- aaCGGC-------UAGCCCCcGCGgCAGAGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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