miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24562 3' -61.3 NC_005264.1 + 127286 0.66 0.714426
Target:  5'- uACGcCGcCCGUGCCcgacuGCGgccgcgaCGUGGGuGAa -3'
miRNA:   3'- -UGC-GC-GGCACGGu----CGCa------GCACCCuCU- -5'
24562 3' -61.3 NC_005264.1 + 154766 0.66 0.714426
Target:  5'- uACGcCGcCCGUGCCcgacuGCGgccgcgaCGUGGGuGAa -3'
miRNA:   3'- -UGC-GC-GGCACGGu----CGCa------GCACCCuCU- -5'
24562 3' -61.3 NC_005264.1 + 1000 0.66 0.714426
Target:  5'- uUGCcCCGcGCCcGUGUgGUGGGGGGg -3'
miRNA:   3'- uGCGcGGCaCGGuCGCAgCACCCUCU- -5'
24562 3' -61.3 NC_005264.1 + 11177 0.66 0.695198
Target:  5'- gGC-CGCCGcuCCGGCGgcgacaCGUGGGGGGc -3'
miRNA:   3'- -UGcGCGGCacGGUCGCa-----GCACCCUCU- -5'
24562 3' -61.3 NC_005264.1 + 142459 0.67 0.666011
Target:  5'- uCGCGCUcUGCCAGCG-CGcGGGuGu -3'
miRNA:   3'- uGCGCGGcACGGUCGCaGCaCCCuCu -5'
24562 3' -61.3 NC_005264.1 + 66970 0.67 0.656222
Target:  5'- gGCGgGaCCGUGUUAGgaaCGUGGGAGGa -3'
miRNA:   3'- -UGCgC-GGCACGGUCgcaGCACCCUCU- -5'
24562 3' -61.3 NC_005264.1 + 54782 0.67 0.646414
Target:  5'- cACGCGCCGagGCCGGCGUUGa------ -3'
miRNA:   3'- -UGCGCGGCa-CGGUCGCAGCacccucu -5'
24562 3' -61.3 NC_005264.1 + 153407 0.67 0.626775
Target:  5'- cUGCGCUGagcagGCCAGaucugGUCGuUGGGGGGg -3'
miRNA:   3'- uGCGCGGCa----CGGUCg----CAGC-ACCCUCU- -5'
24562 3' -61.3 NC_005264.1 + 128646 0.67 0.626775
Target:  5'- cUGCGCUGagcagGCCAGaucugGUCGuUGGGGGGg -3'
miRNA:   3'- uGCGCGGCa----CGGUCg----CAGC-ACCCUCU- -5'
24562 3' -61.3 NC_005264.1 + 78075 0.67 0.619903
Target:  5'- -gGCGCCGggugcucgcuugcgGCCaggcugcugcguuAGCGUCGUGgcGGAGAu -3'
miRNA:   3'- ugCGCGGCa-------------CGG-------------UCGCAGCAC--CCUCU- -5'
24562 3' -61.3 NC_005264.1 + 59709 0.67 0.616958
Target:  5'- cGCGCGCCGcGCCGGCGgcuaccgCGccGGAc- -3'
miRNA:   3'- -UGCGCGGCaCGGUCGCa------GCacCCUcu -5'
24562 3' -61.3 NC_005264.1 + 162759 0.68 0.607152
Target:  5'- gUGCGCCGauaagugcgaggUGCUggAGCGUgG-GGGAGAa -3'
miRNA:   3'- uGCGCGGC------------ACGG--UCGCAgCaCCCUCU- -5'
24562 3' -61.3 NC_005264.1 + 137422 0.68 0.607152
Target:  5'- -aGCGCCGgGCCGGCGUUGc-GGAa- -3'
miRNA:   3'- ugCGCGGCaCGGUCGCAGCacCCUcu -5'
24562 3' -61.3 NC_005264.1 + 119293 0.68 0.607152
Target:  5'- gUGCGCCGauaagugcgaggUGCUggAGCGUgG-GGGAGAa -3'
miRNA:   3'- uGCGCGGC------------ACGG--UCGCAgCaCCCUCU- -5'
24562 3' -61.3 NC_005264.1 + 95370 0.68 0.5585
Target:  5'- cGCGUGCCGccaaacUGCCAG-G-CGUGGGAc- -3'
miRNA:   3'- -UGCGCGGC------ACGGUCgCaGCACCCUcu -5'
24562 3' -61.3 NC_005264.1 + 66360 0.69 0.552727
Target:  5'- uGCGgGCgGUGCgcucaucacaucuucUAGCGaugugaaaUCGUGGGAGAa -3'
miRNA:   3'- -UGCgCGgCACG---------------GUCGC--------AGCACCCUCU- -5'
24562 3' -61.3 NC_005264.1 + 158290 0.69 0.548888
Target:  5'- uGCcCGCCGaGCCGGCGUCc-GGGGGu -3'
miRNA:   3'- -UGcGCGGCaCGGUCGCAGcaCCCUCu -5'
24562 3' -61.3 NC_005264.1 + 155960 0.69 0.548888
Target:  5'- -gGCGCCG-GCCGGCGcCGUcgcgcuGcGGGGAa -3'
miRNA:   3'- ugCGCGGCaCGGUCGCaGCA------C-CCUCU- -5'
24562 3' -61.3 NC_005264.1 + 162693 0.69 0.548888
Target:  5'- gGCGCGCUGcgcGCCGGCGUuaaggcggccgcCG-GGGAGc -3'
miRNA:   3'- -UGCGCGGCa--CGGUCGCA------------GCaCCCUCu -5'
24562 3' -61.3 NC_005264.1 + 126093 0.69 0.548888
Target:  5'- -gGCGCCG-GCCGGCGcCGUcgcgcuGcGGGGAa -3'
miRNA:   3'- ugCGCGGCaCGGUCGCaGCA------C-CCUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.