miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24562 5' -50.9 NC_005264.1 + 126052 0.66 0.992039
Target:  5'- ----gUUGCGCGCUGGCGCcauAGUCg-- -3'
miRNA:   3'- uuaaaGGUGCGUGACCGUG---UCAGaug -5'
24562 5' -50.9 NC_005264.1 + 70636 0.66 0.992039
Target:  5'- ---gUUCGCGCGCaGGCGC-GUCaACa -3'
miRNA:   3'- uuaaAGGUGCGUGaCCGUGuCAGaUG- -5'
24562 5' -50.9 NC_005264.1 + 156001 0.66 0.992039
Target:  5'- ----gUUGCGCGCUGGCGCcauAGUCg-- -3'
miRNA:   3'- uuaaaGGUGCGUGACCGUG---UCAGaug -5'
24562 5' -50.9 NC_005264.1 + 90332 0.66 0.990845
Target:  5'- ----gCCACGCGCcucucGGCGCAGaUCUuCa -3'
miRNA:   3'- uuaaaGGUGCGUGa----CCGUGUC-AGAuG- -5'
24562 5' -50.9 NC_005264.1 + 109834 0.66 0.989516
Target:  5'- ---gUUgGCuaACUGGCACAGUUUGg -3'
miRNA:   3'- uuaaAGgUGcgUGACCGUGUCAGAUg -5'
24562 5' -50.9 NC_005264.1 + 80626 0.66 0.986408
Target:  5'- ---cUCUACGCgauGCUGGCGCcG-CUACc -3'
miRNA:   3'- uuaaAGGUGCG---UGACCGUGuCaGAUG- -5'
24562 5' -50.9 NC_005264.1 + 80514 0.67 0.975573
Target:  5'- ----cCCGCGCGgagccauuguCUGGCACGGaUCUGg -3'
miRNA:   3'- uuaaaGGUGCGU----------GACCGUGUC-AGAUg -5'
24562 5' -50.9 NC_005264.1 + 142412 0.67 0.97394
Target:  5'- ----aCCuCGCAUUacaaaaaaacgccgcGGCGCGGUCUACu -3'
miRNA:   3'- uuaaaGGuGCGUGA---------------CCGUGUCAGAUG- -5'
24562 5' -50.9 NC_005264.1 + 82853 0.68 0.969822
Target:  5'- --cUUCCGCGCgGCcGGCAuCGGUCUc- -3'
miRNA:   3'- uuaAAGGUGCG-UGaCCGU-GUCAGAug -5'
24562 5' -50.9 NC_005264.1 + 133708 0.68 0.96661
Target:  5'- ----gCCGCGCACUGGUGCuGccUCUGg -3'
miRNA:   3'- uuaaaGGUGCGUGACCGUGuC--AGAUg -5'
24562 5' -50.9 NC_005264.1 + 73365 0.68 0.959476
Target:  5'- ---gUCgACGCGCggugcuuuUGGCGCGGcUCUGCc -3'
miRNA:   3'- uuaaAGgUGCGUG--------ACCGUGUC-AGAUG- -5'
24562 5' -50.9 NC_005264.1 + 80484 0.68 0.959476
Target:  5'- ---aUCgACGCGCcugccUGGCACAcgugcGUCUACu -3'
miRNA:   3'- uuaaAGgUGCGUG-----ACCGUGU-----CAGAUG- -5'
24562 5' -50.9 NC_005264.1 + 26288 0.68 0.959476
Target:  5'- ----gCCGCGCGgUGGC-CAGUUUAg -3'
miRNA:   3'- uuaaaGGUGCGUgACCGuGUCAGAUg -5'
24562 5' -50.9 NC_005264.1 + 145751 0.69 0.945534
Target:  5'- ---aUCCACGCGCUGGgcaaacaugguggcCACGGUUa-- -3'
miRNA:   3'- uuaaAGGUGCGUGACC--------------GUGUCAGaug -5'
24562 5' -50.9 NC_005264.1 + 17355 0.69 0.942216
Target:  5'- --cUUCCGCGgcaGCUGGCggcggcGCGGUCUGu -3'
miRNA:   3'- uuaAAGGUGCg--UGACCG------UGUCAGAUg -5'
24562 5' -50.9 NC_005264.1 + 108120 0.69 0.939271
Target:  5'- --cUUCCACGCgaaggucgcggcgcuGCUGGCgaACGG-CUGCg -3'
miRNA:   3'- uuaAAGGUGCG---------------UGACCG--UGUCaGAUG- -5'
24562 5' -50.9 NC_005264.1 + 34076 0.7 0.926536
Target:  5'- ----gCCGCGCACUGGCGCGa----- -3'
miRNA:   3'- uuaaaGGUGCGUGACCGUGUcagaug -5'
24562 5' -50.9 NC_005264.1 + 98171 0.7 0.920779
Target:  5'- ---aUCCccggUGCGCgGGCGCAGUUUACu -3'
miRNA:   3'- uuaaAGGu---GCGUGaCCGUGUCAGAUG- -5'
24562 5' -50.9 NC_005264.1 + 20534 0.7 0.914756
Target:  5'- ----cCCACGaCGCUGGCACGGcgcguuucCUGCu -3'
miRNA:   3'- uuaaaGGUGC-GUGACCGUGUCa-------GAUG- -5'
24562 5' -50.9 NC_005264.1 + 92607 0.71 0.895116
Target:  5'- --gUUUgAUGCGCUGGCccuGCAGaUCUGCg -3'
miRNA:   3'- uuaAAGgUGCGUGACCG---UGUC-AGAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.