Results 1 - 20 of 120 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24563 | 3' | -59.5 | NC_005264.1 | + | 7004 | 0.66 | 0.824565 |
Target: 5'- cCGGCGACGcuuGcGCgGUGGACgccucaUGGCUg -3' miRNA: 3'- -GCCGCUGCu--CcUGgUACCUGg-----ACCGG- -5' |
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24563 | 3' | -59.5 | NC_005264.1 | + | 3605 | 0.66 | 0.824565 |
Target: 5'- aGGcCGugGuGGACgGUGGGCgCUgugGGCg -3' miRNA: 3'- gCC-GCugCuCCUGgUACCUG-GA---CCGg -5' |
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24563 | 3' | -59.5 | NC_005264.1 | + | 1668 | 0.66 | 0.824565 |
Target: 5'- gGGCGACGguGGGGCaaaguauUGGGgC-GGCCu -3' miRNA: 3'- gCCGCUGC--UCCUGgu-----ACCUgGaCCGG- -5' |
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24563 | 3' | -59.5 | NC_005264.1 | + | 124318 | 0.66 | 0.824565 |
Target: 5'- gGGCGGCGGcuGAcCCGUGGGgCgGGCg -3' miRNA: 3'- gCCGCUGCUc-CU-GGUACCUgGaCCGg -5' |
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24563 | 3' | -59.5 | NC_005264.1 | + | 27429 | 0.66 | 0.824565 |
Target: 5'- gGGCauGAUGAGGcuuucaGCCA--GACCUGcGCCg -3' miRNA: 3'- gCCG--CUGCUCC------UGGUacCUGGAC-CGG- -5' |
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24563 | 3' | -59.5 | NC_005264.1 | + | 57356 | 0.66 | 0.824565 |
Target: 5'- cCGGCGGCa--GACCAUGcGAUCUcuGCCa -3' miRNA: 3'- -GCCGCUGcucCUGGUAC-CUGGAc-CGG- -5' |
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24563 | 3' | -59.5 | NC_005264.1 | + | 157735 | 0.66 | 0.824565 |
Target: 5'- gGGCGGCGGcuGAcCCGUGGGgCgGGCg -3' miRNA: 3'- gCCGCUGCUc-CU-GGUACCUgGaCCGg -5' |
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24563 | 3' | -59.5 | NC_005264.1 | + | 62544 | 0.66 | 0.824565 |
Target: 5'- gCGGCGGCcAGGGCCcUGGAgg-GGUUg -3' miRNA: 3'- -GCCGCUGcUCCUGGuACCUggaCCGG- -5' |
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24563 | 3' | -59.5 | NC_005264.1 | + | 31190 | 0.66 | 0.816311 |
Target: 5'- uGGCGGCGGGcACCGcaGACCgaGGCg -3' miRNA: 3'- gCCGCUGCUCcUGGUacCUGGa-CCGg -5' |
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24563 | 3' | -59.5 | NC_005264.1 | + | 114299 | 0.66 | 0.816311 |
Target: 5'- aGGCGACGGGGGCgCGcgGGACgacGCg -3' miRNA: 3'- gCCGCUGCUCCUG-GUa-CCUGgacCGg -5' |
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24563 | 3' | -59.5 | NC_005264.1 | + | 130914 | 0.66 | 0.816311 |
Target: 5'- cCGaGCcGCGAGGGCCGUGGGaaaauGCCc -3' miRNA: 3'- -GC-CGcUGCUCCUGGUACCUggac-CGG- -5' |
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24563 | 3' | -59.5 | NC_005264.1 | + | 91452 | 0.66 | 0.816311 |
Target: 5'- aGGCGAUGAcgcuccgcgcGGAUaaCGUGuugcccACCUGGCCu -3' miRNA: 3'- gCCGCUGCU----------CCUG--GUACc-----UGGACCGG- -5' |
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24563 | 3' | -59.5 | NC_005264.1 | + | 67874 | 0.66 | 0.816311 |
Target: 5'- aGGCGuaGAGGGa-AUGGGCCgcgaGGCCc -3' miRNA: 3'- gCCGCugCUCCUggUACCUGGa---CCGG- -5' |
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24563 | 3' | -59.5 | NC_005264.1 | + | 81164 | 0.66 | 0.816311 |
Target: 5'- uCGGCGuCGAGGAagaaauugguCgAUGGcGCCUuGGCg -3' miRNA: 3'- -GCCGCuGCUCCU----------GgUACC-UGGA-CCGg -5' |
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24563 | 3' | -59.5 | NC_005264.1 | + | 151138 | 0.66 | 0.816311 |
Target: 5'- cCGaGCcGCGAGGGCCGUGGGaaaauGCCc -3' miRNA: 3'- -GC-CGcUGCUCCUGGUACCUggac-CGG- -5' |
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24563 | 3' | -59.5 | NC_005264.1 | + | 31032 | 0.66 | 0.816311 |
Target: 5'- cCGGUGGCGGuGGGCC---GACCgGcGCCa -3' miRNA: 3'- -GCCGCUGCU-CCUGGuacCUGGaC-CGG- -5' |
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24563 | 3' | -59.5 | NC_005264.1 | + | 8458 | 0.66 | 0.816311 |
Target: 5'- cCGGCcugcaACGAGGcggacACCA-GGGCgccgCUGGCCa -3' miRNA: 3'- -GCCGc----UGCUCC-----UGGUaCCUG----GACCGG- -5' |
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24563 | 3' | -59.5 | NC_005264.1 | + | 65369 | 0.66 | 0.807902 |
Target: 5'- uCGGCGAaaAGG-CCGcGG-CCaUGGCCa -3' miRNA: 3'- -GCCGCUgcUCCuGGUaCCuGG-ACCGG- -5' |
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24563 | 3' | -59.5 | NC_005264.1 | + | 7746 | 0.66 | 0.799346 |
Target: 5'- aGGCGGCGGGGACgAUGauguaGCgUGGg- -3' miRNA: 3'- gCCGCUGCUCCUGgUACc----UGgACCgg -5' |
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24563 | 3' | -59.5 | NC_005264.1 | + | 62386 | 0.66 | 0.799346 |
Target: 5'- -aGCGAacuuGGGCCAUuGACCUGcGCCc -3' miRNA: 3'- gcCGCUgcu-CCUGGUAcCUGGAC-CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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