miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24563 3' -59.5 NC_005264.1 + 7004 0.66 0.824565
Target:  5'- cCGGCGACGcuuGcGCgGUGGACgccucaUGGCUg -3'
miRNA:   3'- -GCCGCUGCu--CcUGgUACCUGg-----ACCGG- -5'
24563 3' -59.5 NC_005264.1 + 75392 0.66 0.781821
Target:  5'- gGGcCGAUGcagccgcguGGGGCgCG-GGACCUGGCg -3'
miRNA:   3'- gCC-GCUGC---------UCCUG-GUaCCUGGACCGg -5'
24563 3' -59.5 NC_005264.1 + 106176 0.66 0.781821
Target:  5'- uGGCuGCcagauugcuccuGGGGGCCAUGG-CUaGGCCa -3'
miRNA:   3'- gCCGcUG------------CUCCUGGUACCuGGaCCGG- -5'
24563 3' -59.5 NC_005264.1 + 156553 0.66 0.781821
Target:  5'- gCGGCGAacguCGGGGugCGcGG-CCaucgagGGCCg -3'
miRNA:   3'- -GCCGCU----GCUCCugGUaCCuGGa-----CCGG- -5'
24563 3' -59.5 NC_005264.1 + 63070 0.66 0.781821
Target:  5'- uCGGUcuccagcucGGCGAGGGCCGUcgcGGAaa-GGCCu -3'
miRNA:   3'- -GCCG---------CUGCUCCUGGUA---CCUggaCCGG- -5'
24563 3' -59.5 NC_005264.1 + 125500 0.66 0.781821
Target:  5'- gCGGCGAacguCGGGGugCGcGG-CCaucgagGGCCg -3'
miRNA:   3'- -GCCGCU----GCUCCugGUaCCuGGa-----CCGG- -5'
24563 3' -59.5 NC_005264.1 + 125858 0.66 0.790649
Target:  5'- aGGCGGCGGcGACUAUGGcGCCaGcGCg -3'
miRNA:   3'- gCCGCUGCUcCUGGUACC-UGGaC-CGg -5'
24563 3' -59.5 NC_005264.1 + 148478 0.66 0.790649
Target:  5'- uCGGCGGCua-GACUAUGGgacGCgCUGGUCg -3'
miRNA:   3'- -GCCGCUGcucCUGGUACC---UG-GACCGG- -5'
24563 3' -59.5 NC_005264.1 + 82133 0.66 0.794144
Target:  5'- aGGUauaugcacGCGAGGAUCGcGGAaacuuuuuugucuguCCUGGCCa -3'
miRNA:   3'- gCCGc-------UGCUCCUGGUaCCU---------------GGACCGG- -5'
24563 3' -59.5 NC_005264.1 + 33501 0.66 0.781821
Target:  5'- aGGCGACGGaaccacugcGGG-CGUGGGCUUaGGCg -3'
miRNA:   3'- gCCGCUGCU---------CCUgGUACCUGGA-CCGg -5'
24563 3' -59.5 NC_005264.1 + 156194 0.66 0.790649
Target:  5'- aGGCGGCGGcGACUAUGGcGCCaGcGCg -3'
miRNA:   3'- gCCGCUGCUcCUGGUACC-UGGaC-CGg -5'
24563 3' -59.5 NC_005264.1 + 7746 0.66 0.799346
Target:  5'- aGGCGGCGGGGACgAUGauguaGCgUGGg- -3'
miRNA:   3'- gCCGCUGCUCCUGgUACc----UGgACCgg -5'
24563 3' -59.5 NC_005264.1 + 57356 0.66 0.824565
Target:  5'- cCGGCGGCa--GACCAUGcGAUCUcuGCCa -3'
miRNA:   3'- -GCCGCUGcucCUGGUAC-CUGGAc-CGG- -5'
24563 3' -59.5 NC_005264.1 + 157735 0.66 0.824565
Target:  5'- gGGCGGCGGcuGAcCCGUGGGgCgGGCg -3'
miRNA:   3'- gCCGCUGCUc-CU-GGUACCUgGaCCGg -5'
24563 3' -59.5 NC_005264.1 + 62544 0.66 0.824565
Target:  5'- gCGGCGGCcAGGGCCcUGGAgg-GGUUg -3'
miRNA:   3'- -GCCGCUGcUCCUGGuACCUggaCCGG- -5'
24563 3' -59.5 NC_005264.1 + 8458 0.66 0.816311
Target:  5'- cCGGCcugcaACGAGGcggacACCA-GGGCgccgCUGGCCa -3'
miRNA:   3'- -GCCGc----UGCUCC-----UGGUaCCUG----GACCGG- -5'
24563 3' -59.5 NC_005264.1 + 31032 0.66 0.816311
Target:  5'- cCGGUGGCGGuGGGCC---GACCgGcGCCa -3'
miRNA:   3'- -GCCGCUGCU-CCUGGuacCUGGaC-CGG- -5'
24563 3' -59.5 NC_005264.1 + 151138 0.66 0.816311
Target:  5'- cCGaGCcGCGAGGGCCGUGGGaaaauGCCc -3'
miRNA:   3'- -GC-CGcUGCUCCUGGUACCUggac-CGG- -5'
24563 3' -59.5 NC_005264.1 + 81164 0.66 0.816311
Target:  5'- uCGGCGuCGAGGAagaaauugguCgAUGGcGCCUuGGCg -3'
miRNA:   3'- -GCCGCuGCUCCU----------GgUACC-UGGA-CCGg -5'
24563 3' -59.5 NC_005264.1 + 65369 0.66 0.807902
Target:  5'- uCGGCGAaaAGG-CCGcGG-CCaUGGCCa -3'
miRNA:   3'- -GCCGCUgcUCCuGGUaCCuGG-ACCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.