miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24563 3' -59.5 NC_005264.1 + 21034 1.12 0.001135
Target:  5'- uCGGCGACGAGGACCAUGGACCUGGCCg -3'
miRNA:   3'- -GCCGCUGCUCCUGGUACCUGGACCGG- -5'
24563 3' -59.5 NC_005264.1 + 15481 0.8 0.15592
Target:  5'- gCGGCGAuCGcGGcGGgCAUGGGCCUGGCCu -3'
miRNA:   3'- -GCCGCU-GC-UC-CUgGUACCUGGACCGG- -5'
24563 3' -59.5 NC_005264.1 + 93841 0.79 0.180486
Target:  5'- uGGCGAC-AGGGCCGcGGGCCacUGGCCc -3'
miRNA:   3'- gCCGCUGcUCCUGGUaCCUGG--ACCGG- -5'
24563 3' -59.5 NC_005264.1 + 155665 0.77 0.228522
Target:  5'- --aCGACGGGGaACCcgacccgugcgggAUGGACCUGGCCg -3'
miRNA:   3'- gccGCUGCUCC-UGG-------------UACCUGGACCGG- -5'
24563 3' -59.5 NC_005264.1 + 126388 0.77 0.232842
Target:  5'- --aCGACGGGGaACCcgacccgugcgcggAUGGACCUGGCCg -3'
miRNA:   3'- gccGCUGCUCC-UGG--------------UACCUGGACCGG- -5'
24563 3' -59.5 NC_005264.1 + 124707 0.77 0.23448
Target:  5'- aGGcCGACGAGGGuuGgcgGGcCCUGGCCg -3'
miRNA:   3'- gCC-GCUGCUCCUggUa--CCuGGACCGG- -5'
24563 3' -59.5 NC_005264.1 + 157346 0.77 0.23448
Target:  5'- aGGcCGACGAGGGuuGgcgGGcCCUGGCCg -3'
miRNA:   3'- gCC-GCUGCUCCUggUa--CCuGGACCGG- -5'
24563 3' -59.5 NC_005264.1 + 108753 0.76 0.294762
Target:  5'- gCGG-GGCGAGGACCAUGG-CCaauugGGCg -3'
miRNA:   3'- -GCCgCUGCUCCUGGUACCuGGa----CCGg -5'
24563 3' -59.5 NC_005264.1 + 124850 0.75 0.336395
Target:  5'- cCGGCGGCGGuGGccGCCAcucGCCUGGCCg -3'
miRNA:   3'- -GCCGCUGCU-CC--UGGUaccUGGACCGG- -5'
24563 3' -59.5 NC_005264.1 + 157202 0.75 0.336395
Target:  5'- cCGGCGGCGGuGGccGCCAcucGCCUGGCCg -3'
miRNA:   3'- -GCCGCUGCU-CC--UGGUaccUGGACCGG- -5'
24563 3' -59.5 NC_005264.1 + 137392 0.73 0.390175
Target:  5'- uCGGCGAcaagcaguuCGAGGagGCCcUGGACUgcuUGGCCg -3'
miRNA:   3'- -GCCGCU---------GCUCC--UGGuACCUGG---ACCGG- -5'
24563 3' -59.5 NC_005264.1 + 46599 0.73 0.414882
Target:  5'- gGGCGGCGuGcaGCCucgcggcGGACCUGGCCc -3'
miRNA:   3'- gCCGCUGCuCc-UGGua-----CCUGGACCGG- -5'
24563 3' -59.5 NC_005264.1 + 82399 0.72 0.440527
Target:  5'- gGGCccCGAGGACgAUGGACgCgcGGCCa -3'
miRNA:   3'- gCCGcuGCUCCUGgUACCUG-Ga-CCGG- -5'
24563 3' -59.5 NC_005264.1 + 119052 0.72 0.440527
Target:  5'- aCGGUGAUGAGGACgCAgaacgcgaggcGGACUUGGgCa -3'
miRNA:   3'- -GCCGCUGCUCCUG-GUa----------CCUGGACCgG- -5'
24563 3' -59.5 NC_005264.1 + 150555 0.72 0.48518
Target:  5'- gGGCGGgGAGGGCCGUugggguggGGGCggacGGCCa -3'
miRNA:   3'- gCCGCUgCUCCUGGUA--------CCUGga--CCGG- -5'
24563 3' -59.5 NC_005264.1 + 131498 0.72 0.48518
Target:  5'- gGGCGGgGAGGGCCGUugggguggGGGCggacGGCCa -3'
miRNA:   3'- gCCGCUgCUCCUGGUA--------CCUGga--CCGG- -5'
24563 3' -59.5 NC_005264.1 + 3669 0.71 0.494371
Target:  5'- gGGCGACuggcauuGGugCG-GGGCCUGGCg -3'
miRNA:   3'- gCCGCUGcu-----CCugGUaCCUGGACCGg -5'
24563 3' -59.5 NC_005264.1 + 160087 0.71 0.510174
Target:  5'- aCGGCGcCGGGGgacgcGCCGUuaaaccuagaagacGGGCCcGGCCg -3'
miRNA:   3'- -GCCGCuGCUCC-----UGGUA--------------CCUGGaCCGG- -5'
24563 3' -59.5 NC_005264.1 + 121966 0.71 0.510174
Target:  5'- aCGGCGcCGGGGgacgcGCCGUuaaaccuagaagacGGGCCcGGCCg -3'
miRNA:   3'- -GCCGCuGCUCC-----UGGUA--------------CCUGGaCCGG- -5'
24563 3' -59.5 NC_005264.1 + 159733 0.71 0.512984
Target:  5'- gGGCGACGGGGAgUgagGGGCUUccgaacggcgGGCCg -3'
miRNA:   3'- gCCGCUGCUCCUgGua-CCUGGA----------CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.