miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24563 3' -59.5 NC_005264.1 + 82133 0.66 0.794144
Target:  5'- aGGUauaugcacGCGAGGAUCGcGGAaacuuuuuugucuguCCUGGCCa -3'
miRNA:   3'- gCCGc-------UGCUCCUGGUaCCU---------------GGACCGG- -5'
24563 3' -59.5 NC_005264.1 + 148478 0.66 0.790649
Target:  5'- uCGGCGGCua-GACUAUGGgacGCgCUGGUCg -3'
miRNA:   3'- -GCCGCUGcucCUGGUACC---UG-GACCGG- -5'
24563 3' -59.5 NC_005264.1 + 156194 0.66 0.790649
Target:  5'- aGGCGGCGGcGACUAUGGcGCCaGcGCg -3'
miRNA:   3'- gCCGCUGCUcCUGGUACC-UGGaC-CGg -5'
24563 3' -59.5 NC_005264.1 + 125858 0.66 0.790649
Target:  5'- aGGCGGCGGcGACUAUGGcGCCaGcGCg -3'
miRNA:   3'- gCCGCUGCUcCUGGUACC-UGGaC-CGg -5'
24563 3' -59.5 NC_005264.1 + 63070 0.66 0.781821
Target:  5'- uCGGUcuccagcucGGCGAGGGCCGUcgcGGAaa-GGCCu -3'
miRNA:   3'- -GCCG---------CUGCUCCUGGUA---CCUggaCCGG- -5'
24563 3' -59.5 NC_005264.1 + 33501 0.66 0.781821
Target:  5'- aGGCGACGGaaccacugcGGG-CGUGGGCUUaGGCg -3'
miRNA:   3'- gCCGCUGCU---------CCUgGUACCUGGA-CCGg -5'
24563 3' -59.5 NC_005264.1 + 75392 0.66 0.781821
Target:  5'- gGGcCGAUGcagccgcguGGGGCgCG-GGACCUGGCg -3'
miRNA:   3'- gCC-GCUGC---------UCCUG-GUaCCUGGACCGg -5'
24563 3' -59.5 NC_005264.1 + 106176 0.66 0.781821
Target:  5'- uGGCuGCcagauugcuccuGGGGGCCAUGG-CUaGGCCa -3'
miRNA:   3'- gCCGcUG------------CUCCUGGUACCuGGaCCGG- -5'
24563 3' -59.5 NC_005264.1 + 125500 0.66 0.781821
Target:  5'- gCGGCGAacguCGGGGugCGcGG-CCaucgagGGCCg -3'
miRNA:   3'- -GCCGCU----GCUCCugGUaCCuGGa-----CCGG- -5'
24563 3' -59.5 NC_005264.1 + 156553 0.66 0.781821
Target:  5'- gCGGCGAacguCGGGGugCGcGG-CCaucgagGGCCg -3'
miRNA:   3'- -GCCGCU----GCUCCugGUaCCuGGa-----CCGG- -5'
24563 3' -59.5 NC_005264.1 + 17281 0.67 0.776463
Target:  5'- aGGCGACG-GGGCgGaGGGCUgcccaucuaacugaaUGGUCg -3'
miRNA:   3'- gCCGCUGCuCCUGgUaCCUGG---------------ACCGG- -5'
24563 3' -59.5 NC_005264.1 + 131859 0.67 0.773768
Target:  5'- uCGuGUGACGGGGGCCGgagggcgagcgagugGGACggggGGCUg -3'
miRNA:   3'- -GC-CGCUGCUCCUGGUa--------------CCUGga--CCGG- -5'
24563 3' -59.5 NC_005264.1 + 150194 0.67 0.773768
Target:  5'- uCGuGUGACGGGGGCCGgagggcgagcgagugGGACggggGGCUg -3'
miRNA:   3'- -GC-CGCUGCUCCUGGUa--------------CCUGga--CCGG- -5'
24563 3' -59.5 NC_005264.1 + 132597 0.67 0.772868
Target:  5'- gCGGCGGagGAGGuCUcgGGggaGCCgcgGGCCc -3'
miRNA:   3'- -GCCGCUg-CUCCuGGuaCC---UGGa--CCGG- -5'
24563 3' -59.5 NC_005264.1 + 149456 0.67 0.772868
Target:  5'- gCGGCGGagGAGGuCUcgGGggaGCCgcgGGCCc -3'
miRNA:   3'- -GCCGCUg-CUCCuGGuaCC---UGGa--CCGG- -5'
24563 3' -59.5 NC_005264.1 + 159289 0.67 0.763798
Target:  5'- aGaCGACGAGGAgCG-GGGCCUcuuGCCg -3'
miRNA:   3'- gCcGCUGCUCCUgGUaCCUGGAc--CGG- -5'
24563 3' -59.5 NC_005264.1 + 81652 0.67 0.763798
Target:  5'- uGGUGAUG-GGGCUGUucgucuuggGGucguuCCUGGCCg -3'
miRNA:   3'- gCCGCUGCuCCUGGUA---------CCu----GGACCGG- -5'
24563 3' -59.5 NC_005264.1 + 152669 0.67 0.763798
Target:  5'- uGG-GACGAGGGCUG-GGACCaagcgggGGCg -3'
miRNA:   3'- gCCgCUGCUCCUGGUaCCUGGa------CCGg -5'
24563 3' -59.5 NC_005264.1 + 122763 0.67 0.763798
Target:  5'- aGaCGACGAGGAgCG-GGGCCUcuuGCCg -3'
miRNA:   3'- gCcGCUGCUCCUgGUaCCUGGAc--CGG- -5'
24563 3' -59.5 NC_005264.1 + 21575 0.67 0.763798
Target:  5'- cCGGCGcCGA-GACCGUGGAaagggUGuGCCg -3'
miRNA:   3'- -GCCGCuGCUcCUGGUACCUgg---AC-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.