miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24563 3' -59.5 NC_005264.1 + 1668 0.66 0.824565
Target:  5'- gGGCGACGguGGGGCaaaguauUGGGgC-GGCCu -3'
miRNA:   3'- gCCGCUGC--UCCUGgu-----ACCUgGaCCGG- -5'
24563 3' -59.5 NC_005264.1 + 2203 0.68 0.716036
Target:  5'- aCGGCGuuACcuguaacgauaaaGAGGAauUCAUGGACCcccGGCCu -3'
miRNA:   3'- -GCCGC--UG-------------CUCCU--GGUACCUGGa--CCGG- -5'
24563 3' -59.5 NC_005264.1 + 3605 0.66 0.824565
Target:  5'- aGGcCGugGuGGACgGUGGGCgCUgugGGCg -3'
miRNA:   3'- gCC-GCugCuCCUGgUACCUG-GA---CCGg -5'
24563 3' -59.5 NC_005264.1 + 3669 0.71 0.494371
Target:  5'- gGGCGACuggcauuGGugCG-GGGCCUGGCg -3'
miRNA:   3'- gCCGCUGcu-----CCugGUaCCUGGACCGg -5'
24563 3' -59.5 NC_005264.1 + 7004 0.66 0.824565
Target:  5'- cCGGCGACGcuuGcGCgGUGGACgccucaUGGCUg -3'
miRNA:   3'- -GCCGCUGCu--CcUGgUACCUGg-----ACCGG- -5'
24563 3' -59.5 NC_005264.1 + 7746 0.66 0.799346
Target:  5'- aGGCGGCGGGGACgAUGauguaGCgUGGg- -3'
miRNA:   3'- gCCGCUGCUCCUGgUACc----UGgACCgg -5'
24563 3' -59.5 NC_005264.1 + 8458 0.66 0.816311
Target:  5'- cCGGCcugcaACGAGGcggacACCA-GGGCgccgCUGGCCa -3'
miRNA:   3'- -GCCGc----UGCUCC-----UGGUaCCUG----GACCGG- -5'
24563 3' -59.5 NC_005264.1 + 10192 0.68 0.685117
Target:  5'- uCGGCaGACGAGGAaaGaGGAUaguuuucggccucgCUGGCCu -3'
miRNA:   3'- -GCCG-CUGCUCCUggUaCCUG--------------GACCGG- -5'
24563 3' -59.5 NC_005264.1 + 13798 0.68 0.678289
Target:  5'- aCGGUGAacccgggcaGGGGGCUGUgGGACgUGGCg -3'
miRNA:   3'- -GCCGCUg--------CUCCUGGUA-CCUGgACCGg -5'
24563 3' -59.5 NC_005264.1 + 15481 0.8 0.15592
Target:  5'- gCGGCGAuCGcGGcGGgCAUGGGCCUGGCCu -3'
miRNA:   3'- -GCCGCU-GC-UC-CUgGUACCUGGACCGG- -5'
24563 3' -59.5 NC_005264.1 + 17281 0.67 0.776463
Target:  5'- aGGCGACG-GGGCgGaGGGCUgcccaucuaacugaaUGGUCg -3'
miRNA:   3'- gCCGCUGCuCCUGgUaCCUGG---------------ACCGG- -5'
24563 3' -59.5 NC_005264.1 + 19112 0.69 0.654764
Target:  5'- gCGGCGcggagacgagcacuACGAugGGGCUacGUGGACCUcgcauucGGCCa -3'
miRNA:   3'- -GCCGC--------------UGCU--CCUGG--UACCUGGA-------CCGG- -5'
24563 3' -59.5 NC_005264.1 + 20020 0.67 0.735974
Target:  5'- uGGCG-CGAuuguGGAguccuaCCAUGG-CCUGGCa -3'
miRNA:   3'- gCCGCuGCU----CCU------GGUACCuGGACCGg -5'
24563 3' -59.5 NC_005264.1 + 21034 1.12 0.001135
Target:  5'- uCGGCGACGAGGACCAUGGACCUGGCCg -3'
miRNA:   3'- -GCCGCUGCUCCUGGUACCUGGACCGG- -5'
24563 3' -59.5 NC_005264.1 + 21575 0.67 0.763798
Target:  5'- cCGGCGcCGA-GACCGUGGAaagggUGuGCCg -3'
miRNA:   3'- -GCCGCuGCUcCUGGUACCUgg---AC-CGG- -5'
24563 3' -59.5 NC_005264.1 + 27429 0.66 0.824565
Target:  5'- gGGCauGAUGAGGcuuucaGCCA--GACCUGcGCCg -3'
miRNA:   3'- gCCG--CUGCUCC------UGGUacCUGGAC-CGG- -5'
24563 3' -59.5 NC_005264.1 + 27917 0.7 0.589871
Target:  5'- uGaGCGACGAcGACCGcGGugUUGGCg -3'
miRNA:   3'- gC-CGCUGCUcCUGGUaCCugGACCGg -5'
24563 3' -59.5 NC_005264.1 + 31032 0.66 0.816311
Target:  5'- cCGGUGGCGGuGGGCC---GACCgGcGCCa -3'
miRNA:   3'- -GCCGCUGCU-CCUGGuacCUGGaC-CGG- -5'
24563 3' -59.5 NC_005264.1 + 31190 0.66 0.816311
Target:  5'- uGGCGGCGGGcACCGcaGACCgaGGCg -3'
miRNA:   3'- gCCGCUGCUCcUGGUacCUGGa-CCGg -5'
24563 3' -59.5 NC_005264.1 + 32364 0.7 0.5801
Target:  5'- gGGgGAgGGGGACUacuuuGUGGGCgUGGaCCg -3'
miRNA:   3'- gCCgCUgCUCCUGG-----UACCUGgACC-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.