miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24563 3' -59.5 NC_005264.1 + 21034 1.12 0.001135
Target:  5'- uCGGCGACGAGGACCAUGGACCUGGCCg -3'
miRNA:   3'- -GCCGCUGCUCCUGGUACCUGGACCGG- -5'
24563 3' -59.5 NC_005264.1 + 97996 0.7 0.5801
Target:  5'- -cGCGcacCGGGGAUccaguacgCAUGGugCUGGCCg -3'
miRNA:   3'- gcCGCu--GCUCCUG--------GUACCugGACCGG- -5'
24563 3' -59.5 NC_005264.1 + 132371 0.69 0.629173
Target:  5'- gGGCG-CGAGGAUgaacgUcgGGGCCgagccggGGCCc -3'
miRNA:   3'- gCCGCuGCUCCUG-----GuaCCUGGa------CCGG- -5'
24563 3' -59.5 NC_005264.1 + 124318 0.66 0.824565
Target:  5'- gGGCGGCGGcuGAcCCGUGGGgCgGGCg -3'
miRNA:   3'- gCCGCUGCUc-CU-GGUACCUgGaCCGg -5'
24563 3' -59.5 NC_005264.1 + 157346 0.77 0.23448
Target:  5'- aGGcCGACGAGGGuuGgcgGGcCCUGGCCg -3'
miRNA:   3'- gCC-GCUGCUCCUggUa--CCuGGACCGG- -5'
24563 3' -59.5 NC_005264.1 + 124850 0.75 0.336395
Target:  5'- cCGGCGGCGGuGGccGCCAcucGCCUGGCCg -3'
miRNA:   3'- -GCCGCUGCU-CC--UGGUaccUGGACCGG- -5'
24563 3' -59.5 NC_005264.1 + 150555 0.72 0.48518
Target:  5'- gGGCGGgGAGGGCCGUugggguggGGGCggacGGCCa -3'
miRNA:   3'- gCCGCUgCUCCUGGUA--------CCUGga--CCGG- -5'
24563 3' -59.5 NC_005264.1 + 3669 0.71 0.494371
Target:  5'- gGGCGACuggcauuGGugCG-GGGCCUGGCg -3'
miRNA:   3'- gCCGCUGcu-----CCugGUaCCUGGACCGg -5'
24563 3' -59.5 NC_005264.1 + 127328 0.71 0.541421
Target:  5'- gGGCGACGGGGGC-----ACCUGcGCCg -3'
miRNA:   3'- gCCGCUGCUCCUGguaccUGGAC-CGG- -5'
24563 3' -59.5 NC_005264.1 + 88920 0.7 0.5801
Target:  5'- uCGcGCGugGAGGACaagaacaGGuGCCUGGCa -3'
miRNA:   3'- -GC-CGCugCUCCUGgua----CC-UGGACCGg -5'
24563 3' -59.5 NC_005264.1 + 65165 0.7 0.551019
Target:  5'- gCGGCGGCGcccucucuGGCCAUGG-CCgcGGCCu -3'
miRNA:   3'- -GCCGCUGCuc------CUGGUACCuGGa-CCGG- -5'
24563 3' -59.5 NC_005264.1 + 122320 0.71 0.512984
Target:  5'- gGGCGACGGGGAgUgagGGGCUUccgaacggcgGGCCg -3'
miRNA:   3'- gCCGCUGCUCCUgGua-CCUGGA----------CCGG- -5'
24563 3' -59.5 NC_005264.1 + 15481 0.8 0.15592
Target:  5'- gCGGCGAuCGcGGcGGgCAUGGGCCUGGCCu -3'
miRNA:   3'- -GCCGCU-GC-UC-CUgGUACCUGGACCGG- -5'
24563 3' -59.5 NC_005264.1 + 122113 0.7 0.551019
Target:  5'- gCGGCGGcCGAGGACCcguucgGGcgauuCCcGGCCc -3'
miRNA:   3'- -GCCGCU-GCUCCUGGua----CCu----GGaCCGG- -5'
24563 3' -59.5 NC_005264.1 + 93841 0.79 0.180486
Target:  5'- uGGCGAC-AGGGCCGcGGGCCacUGGCCc -3'
miRNA:   3'- gCCGCUGcUCCUGGUaCCUGG--ACCGG- -5'
24563 3' -59.5 NC_005264.1 + 160087 0.71 0.510174
Target:  5'- aCGGCGcCGGGGgacgcGCCGUuaaaccuagaagacGGGCCcGGCCg -3'
miRNA:   3'- -GCCGCuGCUCC-----UGGUA--------------CCUGGaCCGG- -5'
24563 3' -59.5 NC_005264.1 + 154037 0.7 0.560669
Target:  5'- gCGGCGcucgaaGAGGAgCGcUGGccguCCUGGCCg -3'
miRNA:   3'- -GCCGCug----CUCCUgGU-ACCu---GGACCGG- -5'
24563 3' -59.5 NC_005264.1 + 27917 0.7 0.589871
Target:  5'- uGaGCGACGAcGACCGcGGugUUGGCg -3'
miRNA:   3'- gC-CGCUGCUcCUGGUaCCugGACCGg -5'
24563 3' -59.5 NC_005264.1 + 155665 0.77 0.228522
Target:  5'- --aCGACGGGGaACCcgacccgugcgggAUGGACCUGGCCg -3'
miRNA:   3'- gccGCUGCUCC-UGG-------------UACCUGGACCGG- -5'
24563 3' -59.5 NC_005264.1 + 137392 0.73 0.390175
Target:  5'- uCGGCGAcaagcaguuCGAGGagGCCcUGGACUgcuUGGCCg -3'
miRNA:   3'- -GCCGCU---------GCUCC--UGGuACCUGG---ACCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.