miRNA display CGI


Results 1 - 20 of 64 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24563 5' -55.7 NC_005264.1 + 43760 0.66 0.907364
Target:  5'- aUGGCCGAcGacaCAacucGCCGguUGCUCGCg -3'
miRNA:   3'- aACCGGUU-Cg--GUaua-CGGC--ACGAGCG- -5'
24563 5' -55.7 NC_005264.1 + 137436 0.66 0.907364
Target:  5'- aUGGCCAAaugaauagcGCCGg--GCCG-GCgUUGCg -3'
miRNA:   3'- aACCGGUU---------CGGUauaCGGCaCG-AGCG- -5'
24563 5' -55.7 NC_005264.1 + 76833 0.66 0.907364
Target:  5'- gUGGCCGcaucGGCCucgAUGgucuucucugCGUGCUCGUg -3'
miRNA:   3'- aACCGGU----UCGGua-UACg---------GCACGAGCG- -5'
24563 5' -55.7 NC_005264.1 + 161866 0.66 0.907364
Target:  5'- -cGGCC--GCCAgucUGCCG-GCgCGCg -3'
miRNA:   3'- aaCCGGuuCGGUau-ACGGCaCGaGCG- -5'
24563 5' -55.7 NC_005264.1 + 26094 0.66 0.907364
Target:  5'- uUUGGCCAuagcuaaacuGGCCAcc-GCgCG-GCUCGUg -3'
miRNA:   3'- -AACCGGU----------UCGGUauaCG-GCaCGAGCG- -5'
24563 5' -55.7 NC_005264.1 + 120187 0.66 0.907364
Target:  5'- -cGGCC--GCCAgucUGCCG-GCgCGCg -3'
miRNA:   3'- aaCCGGuuCGGUau-ACGGCaCGaGCG- -5'
24563 5' -55.7 NC_005264.1 + 204 0.66 0.901001
Target:  5'- -gGGCCGcGGCguUAUGgCGUGCcggUGCg -3'
miRNA:   3'- aaCCGGU-UCGguAUACgGCACGa--GCG- -5'
24563 5' -55.7 NC_005264.1 + 84306 0.66 0.901001
Target:  5'- -gGGCCAAGUCGUGcaCCGgGCacggCGCg -3'
miRNA:   3'- aaCCGGUUCGGUAUacGGCaCGa---GCG- -5'
24563 5' -55.7 NC_005264.1 + 48346 0.66 0.894396
Target:  5'- gUUGGCgCAcGCCAUGgcgGCCucguugcgcaGUGC-CGCg -3'
miRNA:   3'- -AACCG-GUuCGGUAUa--CGG----------CACGaGCG- -5'
24563 5' -55.7 NC_005264.1 + 46549 0.66 0.890319
Target:  5'- -aGGCCAcAGCCGUA-GCCGcccGCgccacggcuuccaagUCGCg -3'
miRNA:   3'- aaCCGGU-UCGGUAUaCGGCa--CG---------------AGCG- -5'
24563 5' -55.7 NC_005264.1 + 107666 0.66 0.887554
Target:  5'- uUUGGCCAuAGCCGg--GCCGcgucgGCggucuaCGCa -3'
miRNA:   3'- -AACCGGU-UCGGUauaCGGCa----CGa-----GCG- -5'
24563 5' -55.7 NC_005264.1 + 160194 0.66 0.887554
Target:  5'- gUUGGCggaGGGCCg---GUCGcGCUCGCg -3'
miRNA:   3'- -AACCGg--UUCGGuauaCGGCaCGAGCG- -5'
24563 5' -55.7 NC_005264.1 + 24248 0.66 0.887554
Target:  5'- cUGGCCGuGCUGUugGCUGUGUcCGCc -3'
miRNA:   3'- aACCGGUuCGGUAuaCGGCACGaGCG- -5'
24563 5' -55.7 NC_005264.1 + 121858 0.66 0.887554
Target:  5'- gUUGGCggaGGGCCg---GUCGcGCUCGCg -3'
miRNA:   3'- -AACCGg--UUCGGuauaCGGCaCGAGCG- -5'
24563 5' -55.7 NC_005264.1 + 25646 0.66 0.887554
Target:  5'- --uGCCGcGCUAUAUGCCGaGUaCGCg -3'
miRNA:   3'- aacCGGUuCGGUAUACGGCaCGaGCG- -5'
24563 5' -55.7 NC_005264.1 + 85008 0.66 0.880478
Target:  5'- -cGGUuguucuucgucgCAGGCCAUGUGCCGcgggGCauucggcaacgUCGCu -3'
miRNA:   3'- aaCCG------------GUUCGGUAUACGGCa---CG-----------AGCG- -5'
24563 5' -55.7 NC_005264.1 + 105919 0.66 0.880478
Target:  5'- gUGcGCCAcGCaCGUAcGCCGccccauaaUGCUCGCc -3'
miRNA:   3'- aAC-CGGUuCG-GUAUaCGGC--------ACGAGCG- -5'
24563 5' -55.7 NC_005264.1 + 155787 0.66 0.873173
Target:  5'- -cGGCCGGcGCCGUc-GCCGcuUGCgCGCa -3'
miRNA:   3'- aaCCGGUU-CGGUAuaCGGC--ACGaGCG- -5'
24563 5' -55.7 NC_005264.1 + 53223 0.66 0.873173
Target:  5'- -cGGCCgGGGCCAUuuccAUGaCGUGCgUGCa -3'
miRNA:   3'- aaCCGG-UUCGGUA----UACgGCACGaGCG- -5'
24563 5' -55.7 NC_005264.1 + 3188 0.66 0.873173
Target:  5'- -aGaGCCGAGCCGccgGCCcaGUcggcGCUCGCa -3'
miRNA:   3'- aaC-CGGUUCGGUauaCGG--CA----CGAGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.