miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24563 5' -55.7 NC_005264.1 + 21072 1.08 0.002807
Target:  5'- gUUGGCCAAGCCAUAUGCCGUGCUCGCc -3'
miRNA:   3'- -AACCGGUUCGGUAUACGGCACGAGCG- -5'
24563 5' -55.7 NC_005264.1 + 64682 0.78 0.272734
Target:  5'- -gGGCCu-GCCGgcgggcagGCCGUGCUCGCc -3'
miRNA:   3'- aaCCGGuuCGGUaua-----CGGCACGAGCG- -5'
24563 5' -55.7 NC_005264.1 + 60187 0.75 0.411536
Target:  5'- -gGGCCGcGGCCAcgcgGCCGUcucGCUCGCg -3'
miRNA:   3'- aaCCGGU-UCGGUaua-CGGCA---CGAGCG- -5'
24563 5' -55.7 NC_005264.1 + 109834 0.73 0.505322
Target:  5'- gUUGGCUAacuGGCaCAguuUGgCGUGCUCGCg -3'
miRNA:   3'- -AACCGGU---UCG-GUau-ACgGCACGAGCG- -5'
24563 5' -55.7 NC_005264.1 + 157992 0.73 0.515225
Target:  5'- gUGGCCGAGCCuacucUGUGCCGc-CUgGCg -3'
miRNA:   3'- aACCGGUUCGGu----AUACGGCacGAgCG- -5'
24563 5' -55.7 NC_005264.1 + 124061 0.73 0.515225
Target:  5'- gUGGCCGAGCCuacucUGUGCCGc-CUgGCg -3'
miRNA:   3'- aACCGGUUCGGu----AUACGGCacGAgCG- -5'
24563 5' -55.7 NC_005264.1 + 48060 0.73 0.535256
Target:  5'- aUUGGCCAGGgaCAUcgGCCGaGCggCGCa -3'
miRNA:   3'- -AACCGGUUCg-GUAuaCGGCaCGa-GCG- -5'
24563 5' -55.7 NC_005264.1 + 4463 0.71 0.62796
Target:  5'- cUGGCC-AGCCAUGcagGCCGaacaGaCUCGCu -3'
miRNA:   3'- aACCGGuUCGGUAUa--CGGCa---C-GAGCG- -5'
24563 5' -55.7 NC_005264.1 + 27927 0.71 0.62796
Target:  5'- -aGGCCuguuacuGCUggGUGCCGUGCcguUCGCc -3'
miRNA:   3'- aaCCGGuu-----CGGuaUACGGCACG---AGCG- -5'
24563 5' -55.7 NC_005264.1 + 69203 0.71 0.62796
Target:  5'- gUGGCCGagguGGCgGUucgguugGCCGUGCgCGCa -3'
miRNA:   3'- aACCGGU----UCGgUAua-----CGGCACGaGCG- -5'
24563 5' -55.7 NC_005264.1 + 14898 0.71 0.62796
Target:  5'- -gGGUCgGGGCCGUuaaaGUGCUcUGCUCGCg -3'
miRNA:   3'- aaCCGG-UUCGGUA----UACGGcACGAGCG- -5'
24563 5' -55.7 NC_005264.1 + 110584 0.71 0.62796
Target:  5'- cUGGCuCGAGCCugccgacGCCGUGCgCGUa -3'
miRNA:   3'- aACCG-GUUCGGuaua---CGGCACGaGCG- -5'
24563 5' -55.7 NC_005264.1 + 144894 0.71 0.638379
Target:  5'- gUGGUCGA-CCGcauUGCCGUGgUCGCa -3'
miRNA:   3'- aACCGGUUcGGUau-ACGGCACgAGCG- -5'
24563 5' -55.7 NC_005264.1 + 139320 0.7 0.679918
Target:  5'- -aGGCacgCGGGCCAcacgaacaaucUGcUGCCGUGUUCGCc -3'
miRNA:   3'- aaCCG---GUUCGGU-----------AU-ACGGCACGAGCG- -5'
24563 5' -55.7 NC_005264.1 + 15914 0.7 0.679918
Target:  5'- --aGCCAGGCC----GCCGUGC-CGCg -3'
miRNA:   3'- aacCGGUUCGGuauaCGGCACGaGCG- -5'
24563 5' -55.7 NC_005264.1 + 87788 0.7 0.700479
Target:  5'- -cGGCCAGGUCGUccgcguuUGCCG-GCaagCGCg -3'
miRNA:   3'- aaCCGGUUCGGUAu------ACGGCaCGa--GCG- -5'
24563 5' -55.7 NC_005264.1 + 39534 0.7 0.719793
Target:  5'- gUGGCCGcGCgGU-UGCUgggcgauGUGCUCGCg -3'
miRNA:   3'- aACCGGUuCGgUAuACGG-------CACGAGCG- -5'
24563 5' -55.7 NC_005264.1 + 24487 0.7 0.720802
Target:  5'- cUGcGCguAGCCAcagaggccGCCGUGUUCGCg -3'
miRNA:   3'- aAC-CGguUCGGUaua-----CGGCACGAGCG- -5'
24563 5' -55.7 NC_005264.1 + 135338 0.7 0.720802
Target:  5'- cUGGCCucuGCCuc--GCCGacGCUCGCu -3'
miRNA:   3'- aACCGGuu-CGGuauaCGGCa-CGAGCG- -5'
24563 5' -55.7 NC_005264.1 + 156839 0.69 0.740809
Target:  5'- --cGCCGGucGCCAUG-GCCGUGCgagaCGCg -3'
miRNA:   3'- aacCGGUU--CGGUAUaCGGCACGa---GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.