miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24563 5' -55.7 NC_005264.1 + 14050 0.66 0.873173
Target:  5'- gUGGCgGGGCCGgGUGggaaCGUGCaCGCc -3'
miRNA:   3'- aACCGgUUCGGUaUACg---GCACGaGCG- -5'
24563 5' -55.7 NC_005264.1 + 126265 0.66 0.873173
Target:  5'- -cGGCCGGcGCCGUc-GCCGcuUGCgCGCa -3'
miRNA:   3'- aaCCGGUU-CGGUAuaCGGC--ACGaGCG- -5'
24563 5' -55.7 NC_005264.1 + 131224 0.66 0.873173
Target:  5'- -cGGCggucgccgccgCAGGUCGUGacgcguacucUGCCGUGC-CGCg -3'
miRNA:   3'- aaCCG-----------GUUCGGUAU----------ACGGCACGaGCG- -5'
24563 5' -55.7 NC_005264.1 + 3188 0.66 0.873173
Target:  5'- -aGaGCCGAGCCGccgGCCcaGUcggcGCUCGCa -3'
miRNA:   3'- aaC-CGGUUCGGUauaCGG--CA----CGAGCG- -5'
24563 5' -55.7 NC_005264.1 + 53223 0.66 0.873173
Target:  5'- -cGGCCgGGGCCAUuuccAUGaCGUGCgUGCa -3'
miRNA:   3'- aaCCGG-UUCGGUA----UACgGCACGaGCG- -5'
24563 5' -55.7 NC_005264.1 + 14841 0.66 0.870188
Target:  5'- aUGGUCucuGCCGU-UGCCGcgagggaauugagGCUCGCc -3'
miRNA:   3'- aACCGGuu-CGGUAuACGGCa------------CGAGCG- -5'
24563 5' -55.7 NC_005264.1 + 87869 0.67 0.865645
Target:  5'- -gGGCCAcGCCAga-GuuGUGCaguagCGCg -3'
miRNA:   3'- aaCCGGUuCGGUauaCggCACGa----GCG- -5'
24563 5' -55.7 NC_005264.1 + 144833 0.67 0.849941
Target:  5'- -cGGCCGAcccgccGCCGUcagagccgGUGCCGgcuuugaacgcGCUCGCc -3'
miRNA:   3'- aaCCGGUU------CGGUA--------UACGGCa----------CGAGCG- -5'
24563 5' -55.7 NC_005264.1 + 72587 0.67 0.833418
Target:  5'- aUGGCUggGCgCGcgAUGaaGUGCUCGa -3'
miRNA:   3'- aACCGGuuCG-GUa-UACggCACGAGCg -5'
24563 5' -55.7 NC_005264.1 + 128741 0.67 0.833418
Target:  5'- -cGGCCGcugAGCCAuUGUGCCc-GC-CGCg -3'
miRNA:   3'- aaCCGGU---UCGGU-AUACGGcaCGaGCG- -5'
24563 5' -55.7 NC_005264.1 + 137215 0.68 0.824868
Target:  5'- uUUGGCCuAAGCCucagGCaUGUGCUguaCGCg -3'
miRNA:   3'- -AACCGG-UUCGGuauaCG-GCACGA---GCG- -5'
24563 5' -55.7 NC_005264.1 + 116635 0.68 0.815254
Target:  5'- gUUGGCCAucuuacuAGCgGUccGCCGgcgUGCUCGg -3'
miRNA:   3'- -AACCGGU-------UCGgUAuaCGGC---ACGAGCg -5'
24563 5' -55.7 NC_005264.1 + 118134 0.68 0.815254
Target:  5'- -aGGCCGAGUgGgguacaugaacucUAUGCCGUGgC-CGCc -3'
miRNA:   3'- aaCCGGUUCGgU-------------AUACGGCAC-GaGCG- -5'
24563 5' -55.7 NC_005264.1 + 126871 0.68 0.807232
Target:  5'- -aGGCCGAGCCcuccgaGCCG-GCagGCg -3'
miRNA:   3'- aaCCGGUUCGGuaua--CGGCaCGagCG- -5'
24563 5' -55.7 NC_005264.1 + 155182 0.68 0.807232
Target:  5'- -aGGCCGAGCCcuccgaGCCG-GCagGCg -3'
miRNA:   3'- aaCCGGUUCGGuaua--CGGCaCGagCG- -5'
24563 5' -55.7 NC_005264.1 + 132391 0.68 0.798163
Target:  5'- -gGGCCGAGCCGgg-GCCcgcgGCUCc- -3'
miRNA:   3'- aaCCGGUUCGGUauaCGGca--CGAGcg -5'
24563 5' -55.7 NC_005264.1 + 149662 0.68 0.798163
Target:  5'- -gGGCCGAGCCGgg-GCCcgcgGCUCc- -3'
miRNA:   3'- aaCCGGUUCGGUauaCGGca--CGAGcg -5'
24563 5' -55.7 NC_005264.1 + 15673 0.68 0.798163
Target:  5'- -aGGCCAGGCCc-AUGCCc-GC-CGCg -3'
miRNA:   3'- aaCCGGUUCGGuaUACGGcaCGaGCG- -5'
24563 5' -55.7 NC_005264.1 + 60590 0.68 0.797247
Target:  5'- -cGGCguucuCGAGCCccuucucGUAUGCCGcggcagccgGCUCGCg -3'
miRNA:   3'- aaCCG-----GUUCGG-------UAUACGGCa--------CGAGCG- -5'
24563 5' -55.7 NC_005264.1 + 141672 0.68 0.788938
Target:  5'- -gGGCCGgaugaGGCUGUA-GCCGUGUUCa- -3'
miRNA:   3'- aaCCGGU-----UCGGUAUaCGGCACGAGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.