miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24563 5' -55.7 NC_005264.1 + 204 0.66 0.901001
Target:  5'- -gGGCCGcGGCguUAUGgCGUGCcggUGCg -3'
miRNA:   3'- aaCCGGU-UCGguAUACgGCACGa--GCG- -5'
24563 5' -55.7 NC_005264.1 + 3188 0.66 0.873173
Target:  5'- -aGaGCCGAGCCGccgGCCcaGUcggcGCUCGCa -3'
miRNA:   3'- aaC-CGGUUCGGUauaCGG--CA----CGAGCG- -5'
24563 5' -55.7 NC_005264.1 + 4463 0.71 0.62796
Target:  5'- cUGGCC-AGCCAUGcagGCCGaacaGaCUCGCu -3'
miRNA:   3'- aACCGGuUCGGUAUa--CGGCa---C-GAGCG- -5'
24563 5' -55.7 NC_005264.1 + 14050 0.66 0.873173
Target:  5'- gUGGCgGGGCCGgGUGggaaCGUGCaCGCc -3'
miRNA:   3'- aACCGgUUCGGUaUACg---GCACGaGCG- -5'
24563 5' -55.7 NC_005264.1 + 14841 0.66 0.870188
Target:  5'- aUGGUCucuGCCGU-UGCCGcgagggaauugagGCUCGCc -3'
miRNA:   3'- aACCGGuu-CGGUAuACGGCa------------CGAGCG- -5'
24563 5' -55.7 NC_005264.1 + 14898 0.71 0.62796
Target:  5'- -gGGUCgGGGCCGUuaaaGUGCUcUGCUCGCg -3'
miRNA:   3'- aaCCGG-UUCGGUA----UACGGcACGAGCG- -5'
24563 5' -55.7 NC_005264.1 + 15673 0.68 0.798163
Target:  5'- -aGGCCAGGCCc-AUGCCc-GC-CGCg -3'
miRNA:   3'- aaCCGGUUCGGuaUACGGcaCGaGCG- -5'
24563 5' -55.7 NC_005264.1 + 15914 0.7 0.679918
Target:  5'- --aGCCAGGCC----GCCGUGC-CGCg -3'
miRNA:   3'- aacCGGUUCGGuauaCGGCACGaGCG- -5'
24563 5' -55.7 NC_005264.1 + 21072 1.08 0.002807
Target:  5'- gUUGGCCAAGCCAUAUGCCGUGCUCGCc -3'
miRNA:   3'- -AACCGGUUCGGUAUACGGCACGAGCG- -5'
24563 5' -55.7 NC_005264.1 + 24248 0.66 0.887554
Target:  5'- cUGGCCGuGCUGUugGCUGUGUcCGCc -3'
miRNA:   3'- aACCGGUuCGGUAuaCGGCACGaGCG- -5'
24563 5' -55.7 NC_005264.1 + 24487 0.7 0.720802
Target:  5'- cUGcGCguAGCCAcagaggccGCCGUGUUCGCg -3'
miRNA:   3'- aAC-CGguUCGGUaua-----CGGCACGAGCG- -5'
24563 5' -55.7 NC_005264.1 + 25646 0.66 0.887554
Target:  5'- --uGCCGcGCUAUAUGCCGaGUaCGCg -3'
miRNA:   3'- aacCGGUuCGGUAUACGGCaCGaGCG- -5'
24563 5' -55.7 NC_005264.1 + 26094 0.66 0.907364
Target:  5'- uUUGGCCAuagcuaaacuGGCCAcc-GCgCG-GCUCGUg -3'
miRNA:   3'- -AACCGGU----------UCGGUauaCG-GCaCGAGCG- -5'
24563 5' -55.7 NC_005264.1 + 27927 0.71 0.62796
Target:  5'- -aGGCCuguuacuGCUggGUGCCGUGCcguUCGCc -3'
miRNA:   3'- aaCCGGuu-----CGGuaUACGGCACG---AGCG- -5'
24563 5' -55.7 NC_005264.1 + 39534 0.7 0.719793
Target:  5'- gUGGCCGcGCgGU-UGCUgggcgauGUGCUCGCg -3'
miRNA:   3'- aACCGGUuCGgUAuACGG-------CACGAGCG- -5'
24563 5' -55.7 NC_005264.1 + 43760 0.66 0.907364
Target:  5'- aUGGCCGAcGacaCAacucGCCGguUGCUCGCg -3'
miRNA:   3'- aACCGGUU-Cg--GUaua-CGGC--ACGAGCG- -5'
24563 5' -55.7 NC_005264.1 + 46549 0.66 0.890319
Target:  5'- -aGGCCAcAGCCGUA-GCCGcccGCgccacggcuuccaagUCGCg -3'
miRNA:   3'- aaCCGGU-UCGGUAUaCGGCa--CG---------------AGCG- -5'
24563 5' -55.7 NC_005264.1 + 48060 0.73 0.535256
Target:  5'- aUUGGCCAGGgaCAUcgGCCGaGCggCGCa -3'
miRNA:   3'- -AACCGGUUCg-GUAuaCGGCaCGa-GCG- -5'
24563 5' -55.7 NC_005264.1 + 48346 0.66 0.894396
Target:  5'- gUUGGCgCAcGCCAUGgcgGCCucguugcgcaGUGC-CGCg -3'
miRNA:   3'- -AACCG-GUuCGGUAUa--CGG----------CACGaGCG- -5'
24563 5' -55.7 NC_005264.1 + 53223 0.66 0.873173
Target:  5'- -cGGCCgGGGCCAUuuccAUGaCGUGCgUGCa -3'
miRNA:   3'- aaCCGG-UUCGGUA----UACgGCACGaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.