miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24563 5' -55.7 NC_005264.1 + 21072 1.08 0.002807
Target:  5'- gUUGGCCAAGCCAUAUGCCGUGCUCGCc -3'
miRNA:   3'- -AACCGGUUCGGUAUACGGCACGAGCG- -5'
24563 5' -55.7 NC_005264.1 + 150828 0.66 0.873173
Target:  5'- -cGGCggucgccgccgCAGGUCGUGacgcguacucUGCCGUGC-CGCg -3'
miRNA:   3'- aaCCG-----------GUUCGGUAU----------ACGGCACGaGCG- -5'
24563 5' -55.7 NC_005264.1 + 155787 0.66 0.873173
Target:  5'- -cGGCCGGcGCCGUc-GCCGcuUGCgCGCa -3'
miRNA:   3'- aaCCGGUU-CGGUAuaCGGC--ACGaGCG- -5'
24563 5' -55.7 NC_005264.1 + 120187 0.66 0.907364
Target:  5'- -cGGCC--GCCAgucUGCCG-GCgCGCg -3'
miRNA:   3'- aaCCGGuuCGGUau-ACGGCaCGaGCG- -5'
24563 5' -55.7 NC_005264.1 + 48060 0.73 0.535256
Target:  5'- aUUGGCCAGGgaCAUcgGCCGaGCggCGCa -3'
miRNA:   3'- -AACCGGUUCg-GUAuaCGGCaCGa-GCG- -5'
24563 5' -55.7 NC_005264.1 + 125214 0.69 0.740809
Target:  5'- --cGCCGGucGCCAUG-GCCGUGCgagaCGCg -3'
miRNA:   3'- aacCGGUU--CGGUAUaCGGCACGa---GCG- -5'
24563 5' -55.7 NC_005264.1 + 59776 0.69 0.770059
Target:  5'- cUGGCCGuGGCUGUccacgGCCGUGUcCGCc -3'
miRNA:   3'- aACCGGU-UCGGUAua---CGGCACGaGCG- -5'
24563 5' -55.7 NC_005264.1 + 60590 0.68 0.797247
Target:  5'- -cGGCguucuCGAGCCccuucucGUAUGCCGcggcagccgGCUCGCg -3'
miRNA:   3'- aaCCG-----GUUCGG-------UAUACGGCa--------CGAGCG- -5'
24563 5' -55.7 NC_005264.1 + 118134 0.68 0.815254
Target:  5'- -aGGCCGAGUgGgguacaugaacucUAUGCCGUGgC-CGCc -3'
miRNA:   3'- aaCCGGUUCGgU-------------AUACGGCAC-GaGCG- -5'
24563 5' -55.7 NC_005264.1 + 14050 0.66 0.873173
Target:  5'- gUGGCgGGGCCGgGUGggaaCGUGCaCGCc -3'
miRNA:   3'- aACCGgUUCGGUaUACg---GCACGaGCG- -5'
24563 5' -55.7 NC_005264.1 + 128741 0.67 0.833418
Target:  5'- -cGGCCGcugAGCCAuUGUGCCc-GC-CGCg -3'
miRNA:   3'- aaCCGGU---UCGGU-AUACGGcaCGaGCG- -5'
24563 5' -55.7 NC_005264.1 + 155182 0.68 0.807232
Target:  5'- -aGGCCGAGCCcuccgaGCCG-GCagGCg -3'
miRNA:   3'- aaCCGGUUCGGuaua--CGGCaCGagCG- -5'
24563 5' -55.7 NC_005264.1 + 64682 0.78 0.272734
Target:  5'- -gGGCCu-GCCGgcgggcagGCCGUGCUCGCc -3'
miRNA:   3'- aaCCGGuuCGGUaua-----CGGCACGAGCG- -5'
24563 5' -55.7 NC_005264.1 + 72587 0.67 0.833418
Target:  5'- aUGGCUggGCgCGcgAUGaaGUGCUCGa -3'
miRNA:   3'- aACCGGuuCG-GUa-UACggCACGAGCg -5'
24563 5' -55.7 NC_005264.1 + 109834 0.73 0.505322
Target:  5'- gUUGGCUAacuGGCaCAguuUGgCGUGCUCGCg -3'
miRNA:   3'- -AACCGGU---UCG-GUau-ACgGCACGAGCG- -5'
24563 5' -55.7 NC_005264.1 + 132391 0.68 0.798163
Target:  5'- -gGGCCGAGCCGgg-GCCcgcgGCUCc- -3'
miRNA:   3'- aaCCGGUUCGGUauaCGGca--CGAGcg -5'
24563 5' -55.7 NC_005264.1 + 144833 0.67 0.849941
Target:  5'- -cGGCCGAcccgccGCCGUcagagccgGUGCCGgcuuugaacgcGCUCGCc -3'
miRNA:   3'- aaCCGGUU------CGGUA--------UACGGCa----------CGAGCG- -5'
24563 5' -55.7 NC_005264.1 + 59115 0.66 0.873173
Target:  5'- -cGGCCGccGCCGcugAUGCCGcGC-CGCc -3'
miRNA:   3'- aaCCGGUu-CGGUa--UACGGCaCGaGCG- -5'
24563 5' -55.7 NC_005264.1 + 157992 0.73 0.515225
Target:  5'- gUGGCCGAGCCuacucUGUGCCGc-CUgGCg -3'
miRNA:   3'- aACCGGUUCGGu----AUACGGCacGAgCG- -5'
24563 5' -55.7 NC_005264.1 + 90529 0.69 0.760424
Target:  5'- -aGGCCAAaccgccaacGCCAUAgUGCCGUGa--GCu -3'
miRNA:   3'- aaCCGGUU---------CGGUAU-ACGGCACgagCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.