miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24567 5' -53.6 NC_005264.1 + 72298 0.66 0.965869
Target:  5'- gGAGACGCggugCGAuaacacauucuuuGCCCUGUGgaugccAGAUc -3'
miRNA:   3'- gCUCUGCGa---GCU-------------UGGGACGCa-----UCUAa -5'
24567 5' -53.6 NC_005264.1 + 106250 0.67 0.947175
Target:  5'- gCGAGGCGCUCGcGCCUgcUGaCGgcGGa- -3'
miRNA:   3'- -GCUCUGCGAGCuUGGG--AC-GCauCUaa -5'
24567 5' -53.6 NC_005264.1 + 5925 0.67 0.931361
Target:  5'- gCGAGGCGCUaucuaaccacggccCGAACCCgcgGCGUu---- -3'
miRNA:   3'- -GCUCUGCGA--------------GCUUGGGa--CGCAucuaa -5'
24567 5' -53.6 NC_005264.1 + 75134 0.68 0.92217
Target:  5'- aGAGACGUUCGA-CCCg--GUAGAg- -3'
miRNA:   3'- gCUCUGCGAGCUuGGGacgCAUCUaa -5'
24567 5' -53.6 NC_005264.1 + 83614 0.68 0.916431
Target:  5'- gCGAGGcCGCggcgGAACCCaGCGUGGGc- -3'
miRNA:   3'- -GCUCU-GCGag--CUUGGGaCGCAUCUaa -5'
24567 5' -53.6 NC_005264.1 + 78797 0.68 0.910446
Target:  5'- aGAGGCGCcgCGAGCuugCCUaccGCGUGGAc- -3'
miRNA:   3'- gCUCUGCGa-GCUUG---GGA---CGCAUCUaa -5'
24567 5' -53.6 NC_005264.1 + 80758 0.69 0.884097
Target:  5'- gCGGGaACGCUCGAcCCCUccGCGcAGAg- -3'
miRNA:   3'- -GCUC-UGCGAGCUuGGGA--CGCaUCUaa -5'
24567 5' -53.6 NC_005264.1 + 16728 0.7 0.837792
Target:  5'- aCGAuGGCGCaCGAACCCgaaUGCGUAGu-- -3'
miRNA:   3'- -GCU-CUGCGaGCUUGGG---ACGCAUCuaa -5'
24567 5' -53.6 NC_005264.1 + 22847 0.7 0.837792
Target:  5'- gCGAGACGCUCGu-CCUU-CGUGGGc- -3'
miRNA:   3'- -GCUCUGCGAGCuuGGGAcGCAUCUaa -5'
24567 5' -53.6 NC_005264.1 + 128988 0.7 0.829358
Target:  5'- aGGGACuGC-CGGACCCgUGCGgcGAUg -3'
miRNA:   3'- gCUCUG-CGaGCUUGGG-ACGCauCUAa -5'
24567 5' -53.6 NC_005264.1 + 53867 0.73 0.675341
Target:  5'- aGAGACGCgUCGuACCCcGUGUAGGg- -3'
miRNA:   3'- gCUCUGCG-AGCuUGGGaCGCAUCUaa -5'
24567 5' -53.6 NC_005264.1 + 139949 0.75 0.561496
Target:  5'- aGAGACcCUCGGGCCCUGCccggAGAUg -3'
miRNA:   3'- gCUCUGcGAGCUUGGGACGca--UCUAa -5'
24567 5' -53.6 NC_005264.1 + 105768 0.8 0.326571
Target:  5'- uGAGGCGCUCGAGCCCUagcccGCGgGGGUc -3'
miRNA:   3'- gCUCUGCGAGCUUGGGA-----CGCaUCUAa -5'
24567 5' -53.6 NC_005264.1 + 25872 1.06 0.007534
Target:  5'- gCGAGACGCUCGAACCCUGCGUAGAUUg -3'
miRNA:   3'- -GCUCUGCGAGCUUGGGACGCAUCUAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.