miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24568 3' -59.7 NC_005264.1 + 141412 0.66 0.721101
Target:  5'- cACUGGAGuAGCUCCUguuaCGGCCaaCUCg- -3'
miRNA:   3'- -UGGUCUC-UCGAGGA----GCCGGgaGAGau -5'
24568 3' -59.7 NC_005264.1 + 14671 0.66 0.71129
Target:  5'- gGCCGGGGAGCU-CUUGGUgCUCa--- -3'
miRNA:   3'- -UGGUCUCUCGAgGAGCCGgGAGagau -5'
24568 3' -59.7 NC_005264.1 + 17769 0.67 0.701414
Target:  5'- --aGGAGAGCUgCC-CGGCCCggcUUCUAg -3'
miRNA:   3'- uggUCUCUCGA-GGaGCCGGGa--GAGAU- -5'
24568 3' -59.7 NC_005264.1 + 70870 0.67 0.691482
Target:  5'- uGCCAGcucGGAGUUucCCUCGGCCC-CUg-- -3'
miRNA:   3'- -UGGUC---UCUCGA--GGAGCCGGGaGAgau -5'
24568 3' -59.7 NC_005264.1 + 162615 0.67 0.67148
Target:  5'- uACCAGAGAcGUaggCUUCGcGCCC-CUCUGc -3'
miRNA:   3'- -UGGUCUCU-CGa--GGAGC-CGGGaGAGAU- -5'
24568 3' -59.7 NC_005264.1 + 119438 0.67 0.67148
Target:  5'- uACCAGAGAcGUaggCUUCGcGCCC-CUCUGc -3'
miRNA:   3'- -UGGUCUCU-CGa--GGAGC-CGGGaGAGAU- -5'
24568 3' -59.7 NC_005264.1 + 14491 0.67 0.661429
Target:  5'- cACCA-AGAGCUCCcCGGCCCggggCacggUCUAu -3'
miRNA:   3'- -UGGUcUCUCGAGGaGCCGGGa---G----AGAU- -5'
24568 3' -59.7 NC_005264.1 + 150800 0.68 0.600913
Target:  5'- cGCCAGAGAGCagaCUCGcCCCacCUCUGg -3'
miRNA:   3'- -UGGUCUCUCGag-GAGCcGGGa-GAGAU- -5'
24568 3' -59.7 NC_005264.1 + 131253 0.68 0.600913
Target:  5'- cGCCAGAGAGCagaCUCGcCCCacCUCUGg -3'
miRNA:   3'- -UGGUCUCUCGag-GAGCcGGGa-GAGAU- -5'
24568 3' -59.7 NC_005264.1 + 107785 0.73 0.339267
Target:  5'- cCCGGAuGAGCUCCUCGaGaCCCucgcUCUCUAc -3'
miRNA:   3'- uGGUCU-CUCGAGGAGC-C-GGG----AGAGAU- -5'
24568 3' -59.7 NC_005264.1 + 26241 1.06 0.001961
Target:  5'- gACCAGAGAGCUCCUCGGCCCUCUCUAc -3'
miRNA:   3'- -UGGUCUCUCGAGGAGCCGGGAGAGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.