miRNA display CGI


Results 1 - 20 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24568 5' -56.7 NC_005264.1 + 7182 0.66 0.919806
Target:  5'- -gUUGGCGCCGcCCGcAGGGAcaaccccGCGCCa -3'
miRNA:   3'- gaAGCUGCGGU-GGC-UCCUUc------UGCGGc -5'
24568 5' -56.7 NC_005264.1 + 149924 0.66 0.919806
Target:  5'- ---gGACGCguCgGGGGAGGACugcgagGCCGg -3'
miRNA:   3'- gaagCUGCGguGgCUCCUUCUG------CGGC- -5'
24568 5' -56.7 NC_005264.1 + 132128 0.66 0.919806
Target:  5'- ---gGACGCguCgGGGGAGGACugcgagGCCGg -3'
miRNA:   3'- gaagCUGCGguGgCUCCUUCUG------CGGC- -5'
24568 5' -56.7 NC_005264.1 + 131222 0.66 0.919806
Target:  5'- --gCGGuCGCCGCCGcAGGucguGACGCg- -3'
miRNA:   3'- gaaGCU-GCGGUGGC-UCCuu--CUGCGgc -5'
24568 5' -56.7 NC_005264.1 + 58994 0.66 0.919806
Target:  5'- gUUUGACGCgCGCCGcGGAaaucGGuuUGCCGa -3'
miRNA:   3'- gAAGCUGCG-GUGGCuCCU----UCu-GCGGC- -5'
24568 5' -56.7 NC_005264.1 + 42202 0.66 0.919806
Target:  5'- -gUCGACacuGCCGCCGuGGccGACGagcaCGa -3'
miRNA:   3'- gaAGCUG---CGGUGGCuCCuuCUGCg---GC- -5'
24568 5' -56.7 NC_005264.1 + 150830 0.66 0.919806
Target:  5'- --gCGGuCGCCGCCGcAGGucguGACGCg- -3'
miRNA:   3'- gaaGCU-GCGGUGGC-UCCuu--CUGCGgc -5'
24568 5' -56.7 NC_005264.1 + 125703 0.66 0.91418
Target:  5'- --cUGGCGCCAgcagCGAGGccGAGACgGCCGc -3'
miRNA:   3'- gaaGCUGCGGUg---GCUCC--UUCUG-CGGC- -5'
24568 5' -56.7 NC_005264.1 + 121407 0.66 0.91418
Target:  5'- ---aGugGCCGucgcCCGcAGGAGcccGGCGCCGg -3'
miRNA:   3'- gaagCugCGGU----GGC-UCCUU---CUGCGGC- -5'
24568 5' -56.7 NC_005264.1 + 131956 0.66 0.91418
Target:  5'- --cCGACGCguccCCGAucGAGACGCCGu -3'
miRNA:   3'- gaaGCUGCGgu--GGCUccUUCUGCGGC- -5'
24568 5' -56.7 NC_005264.1 + 160646 0.66 0.91418
Target:  5'- ---aGugGCCGucgcCCGcAGGAGcccGGCGCCGg -3'
miRNA:   3'- gaagCugCGGU----GGC-UCCUU---CUGCGGC- -5'
24568 5' -56.7 NC_005264.1 + 156350 0.66 0.91418
Target:  5'- --cUGGCGCCAgcagCGAGGccGAGACgGCCGc -3'
miRNA:   3'- gaaGCUGCGGUg---GCUCC--UUCUG-CGGC- -5'
24568 5' -56.7 NC_005264.1 + 82402 0.66 0.91418
Target:  5'- -cUUGG-GCC-CCGAGGAcgauGGACGCgCGg -3'
miRNA:   3'- gaAGCUgCGGuGGCUCCU----UCUGCG-GC- -5'
24568 5' -56.7 NC_005264.1 + 9780 0.66 0.91418
Target:  5'- cCUUCGGCG-CAUgGGGGggGACuaCu -3'
miRNA:   3'- -GAAGCUGCgGUGgCUCCuuCUGcgGc -5'
24568 5' -56.7 NC_005264.1 + 35376 0.66 0.91418
Target:  5'- --cCGGCGCUAgaCGGGcuGggGACGCCc -3'
miRNA:   3'- gaaGCUGCGGUg-GCUC--CuuCUGCGGc -5'
24568 5' -56.7 NC_005264.1 + 150096 0.66 0.91418
Target:  5'- --cCGACGCguccCCGAucGAGACGCCGu -3'
miRNA:   3'- gaaGCUGCGgu--GGCUccUUCUGCGGC- -5'
24568 5' -56.7 NC_005264.1 + 141772 0.66 0.913605
Target:  5'- -cUCGagugugcGCGCCGCgGAGGuGGuaACGCCa -3'
miRNA:   3'- gaAGC-------UGCGGUGgCUCCuUC--UGCGGc -5'
24568 5' -56.7 NC_005264.1 + 125293 0.66 0.908327
Target:  5'- -gUCGuCGCCGCCGucGGGAGGCa--- -3'
miRNA:   3'- gaAGCuGCGGUGGCu-CCUUCUGcggc -5'
24568 5' -56.7 NC_005264.1 + 61076 0.66 0.908327
Target:  5'- -gUCGGCcCCACCGcGGcguACGCCGa -3'
miRNA:   3'- gaAGCUGcGGUGGCuCCuucUGCGGC- -5'
24568 5' -56.7 NC_005264.1 + 156760 0.66 0.908327
Target:  5'- -gUCGuCGCCGCCGucGGGAGGCa--- -3'
miRNA:   3'- gaAGCuGCGGUGGCu-CCUUCUGcggc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.