miRNA display CGI


Results 1 - 20 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24568 5' -56.7 NC_005264.1 + 26276 1.09 0.003017
Target:  5'- uCUUCGACGCCACCGAGGAAGACGCCGg -3'
miRNA:   3'- -GAAGCUGCGGUGGCUCCUUCUGCGGC- -5'
24568 5' -56.7 NC_005264.1 + 125670 0.83 0.160441
Target:  5'- gUUCGccGCGCCGCCGAGGAGuucuccgccagcGACGCCGc -3'
miRNA:   3'- gAAGC--UGCGGUGGCUCCUU------------CUGCGGC- -5'
24568 5' -56.7 NC_005264.1 + 156383 0.83 0.160441
Target:  5'- gUUCGccGCGCCGCCGAGGAGuucuccgccagcGACGCCGc -3'
miRNA:   3'- gAAGC--UGCGGUGGCUCCUU------------CUGCGGC- -5'
24568 5' -56.7 NC_005264.1 + 5051 0.81 0.200252
Target:  5'- -gUgGGCGCCGCCuagcuGGGAAGACGCCGa -3'
miRNA:   3'- gaAgCUGCGGUGGc----UCCUUCUGCGGC- -5'
24568 5' -56.7 NC_005264.1 + 69826 0.79 0.29214
Target:  5'- --aCGACGCCGCCGGGGugAAGGcCGCCc -3'
miRNA:   3'- gaaGCUGCGGUGGCUCC--UUCU-GCGGc -5'
24568 5' -56.7 NC_005264.1 + 94587 0.78 0.305701
Target:  5'- gUUCGAUGgCAUCGAGGAAGAcaagcccgcCGCCGg -3'
miRNA:   3'- gAAGCUGCgGUGGCUCCUUCU---------GCGGC- -5'
24568 5' -56.7 NC_005264.1 + 58695 0.75 0.431145
Target:  5'- --gCGACGCCGCuuaCGAGGAGG-UGCCGc -3'
miRNA:   3'- gaaGCUGCGGUG---GCUCCUUCuGCGGC- -5'
24568 5' -56.7 NC_005264.1 + 129750 0.74 0.494711
Target:  5'- -aUCcGCGCCcCUGAGGgcGGCGCCGc -3'
miRNA:   3'- gaAGcUGCGGuGGCUCCuuCUGCGGC- -5'
24568 5' -56.7 NC_005264.1 + 152303 0.74 0.494711
Target:  5'- -aUCcGCGCCcCUGAGGgcGGCGCCGc -3'
miRNA:   3'- gaAGcUGCGGuGGCUCCuuCUGCGGC- -5'
24568 5' -56.7 NC_005264.1 + 148664 0.73 0.532893
Target:  5'- --gCGAuCGCCACCGAGGcGAGAaauaGCCu -3'
miRNA:   3'- gaaGCU-GCGGUGGCUCC-UUCUg---CGGc -5'
24568 5' -56.7 NC_005264.1 + 122712 0.73 0.532893
Target:  5'- -cUCGGCGgCGagaCGAGGAGGACGgCGa -3'
miRNA:   3'- gaAGCUGCgGUg--GCUCCUUCUGCgGC- -5'
24568 5' -56.7 NC_005264.1 + 159341 0.73 0.532893
Target:  5'- -cUCGGCGgCGagaCGAGGAGGACGgCGa -3'
miRNA:   3'- gaAGCUGCgGUg--GCUCCUUCUGCgGC- -5'
24568 5' -56.7 NC_005264.1 + 121794 0.73 0.552381
Target:  5'- --cCGGCGCCguACCGucuGGGGAGugGUCGg -3'
miRNA:   3'- gaaGCUGCGG--UGGC---UCCUUCugCGGC- -5'
24568 5' -56.7 NC_005264.1 + 160258 0.73 0.552381
Target:  5'- --cCGGCGCCguACCGucuGGGGAGugGUCGg -3'
miRNA:   3'- gaaGCUGCGG--UGGC---UCCUUCugCGGC- -5'
24568 5' -56.7 NC_005264.1 + 61639 0.72 0.600914
Target:  5'- --aCGGCGCUcgagcaacucggcGCCGAGGAgcGGGcCGCCGa -3'
miRNA:   3'- gaaGCUGCGG-------------UGGCUCCU--UCU-GCGGC- -5'
24568 5' -56.7 NC_005264.1 + 7001 0.72 0.601913
Target:  5'- --gCGACGCUugCGcGGuGGACGCCu -3'
miRNA:   3'- gaaGCUGCGGugGCuCCuUCUGCGGc -5'
24568 5' -56.7 NC_005264.1 + 58599 0.72 0.61191
Target:  5'- uCUUCaGCGCUACCGuGGggGGCGaaGu -3'
miRNA:   3'- -GAAGcUGCGGUGGCuCCuuCUGCggC- -5'
24568 5' -56.7 NC_005264.1 + 63869 0.71 0.641958
Target:  5'- -aUCGACGaCAUCGcGGggGACGUCa -3'
miRNA:   3'- gaAGCUGCgGUGGCuCCuuCUGCGGc -5'
24568 5' -56.7 NC_005264.1 + 53942 0.71 0.661966
Target:  5'- -aUUGugGCgAagaCGAGGAcGGCGCCGg -3'
miRNA:   3'- gaAGCugCGgUg--GCUCCUuCUGCGGC- -5'
24568 5' -56.7 NC_005264.1 + 127090 0.71 0.661966
Target:  5'- --cCGACGCCGCaucuGGGGcgccGACGCCGc -3'
miRNA:   3'- gaaGCUGCGGUGg---CUCCuu--CUGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.