miRNA display CGI


Results 21 - 40 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24568 5' -56.7 NC_005264.1 + 156760 0.66 0.908327
Target:  5'- -gUCGuCGCCGCCGucGGGAGGCa--- -3'
miRNA:   3'- gaAGCuGCGGUGGCu-CCUUCUGcggc -5'
24568 5' -56.7 NC_005264.1 + 22880 0.66 0.908327
Target:  5'- -cUCGugGCUAuucauagguuUCGAGGAAGAgCGgCGa -3'
miRNA:   3'- gaAGCugCGGU----------GGCUCCUUCU-GCgGC- -5'
24568 5' -56.7 NC_005264.1 + 141767 0.66 0.902248
Target:  5'- --cCGACGCCGCgGAaGAAGAUccuugGCCu -3'
miRNA:   3'- gaaGCUGCGGUGgCUcCUUCUG-----CGGc -5'
24568 5' -56.7 NC_005264.1 + 121918 0.66 0.902248
Target:  5'- --gCGGCGCgG-CGGGGAGGGCGaCGg -3'
miRNA:   3'- gaaGCUGCGgUgGCUCCUUCUGCgGC- -5'
24568 5' -56.7 NC_005264.1 + 96312 0.66 0.902248
Target:  5'- --aCG-UGUCGCCGGGGAGcaacaaGCGCCGg -3'
miRNA:   3'- gaaGCuGCGGUGGCUCCUUc-----UGCGGC- -5'
24568 5' -56.7 NC_005264.1 + 60764 0.66 0.902248
Target:  5'- -cUCGAgaaCGCCGCCGcGGuaaucaAGGACGUCa -3'
miRNA:   3'- gaAGCU---GCGGUGGCuCC------UUCUGCGGc -5'
24568 5' -56.7 NC_005264.1 + 160134 0.66 0.902248
Target:  5'- --gCGGCGCgG-CGGGGAGGGCGaCGg -3'
miRNA:   3'- gaaGCUGCGgUgGCUCCUUCUGCgGC- -5'
24568 5' -56.7 NC_005264.1 + 18727 0.66 0.902248
Target:  5'- --cUGACGCCGgCGcgcccucagGGGGAGACGgCGc -3'
miRNA:   3'- gaaGCUGCGGUgGC---------UCCUUCUGCgGC- -5'
24568 5' -56.7 NC_005264.1 + 101102 0.66 0.902248
Target:  5'- ---gGGCGCCGCCGcuugcgcgaagAGGAacugcuagAGACGCgGa -3'
miRNA:   3'- gaagCUGCGGUGGC-----------UCCU--------UCUGCGgC- -5'
24568 5' -56.7 NC_005264.1 + 66621 0.66 0.901627
Target:  5'- --cCGGCGCCGucgcggcCCGAGGcAAGcUGCCa -3'
miRNA:   3'- gaaGCUGCGGU-------GGCUCC-UUCuGCGGc -5'
24568 5' -56.7 NC_005264.1 + 65368 0.66 0.901627
Target:  5'- -cUUGACGCCGCCGGGuaGAgucucgcAGGCGaCGg -3'
miRNA:   3'- gaAGCUGCGGUGGCUC--CU-------UCUGCgGC- -5'
24568 5' -56.7 NC_005264.1 + 85307 0.66 0.898493
Target:  5'- --gCGugGCauuugucucgcaaugCGCCGAGGGAcuCGCCGg -3'
miRNA:   3'- gaaGCugCG---------------GUGGCUCCUUcuGCGGC- -5'
24568 5' -56.7 NC_005264.1 + 97172 0.66 0.895945
Target:  5'- -cUCGAuacguuUGCCGCCGAGGcGGACaaGCUc -3'
miRNA:   3'- gaAGCU------GCGGUGGCUCCuUCUG--CGGc -5'
24568 5' -56.7 NC_005264.1 + 60308 0.66 0.895945
Target:  5'- aUUCgGGCGCgACCGGGGcguauGGGAuCGUCGa -3'
miRNA:   3'- gAAG-CUGCGgUGGCUCC-----UUCU-GCGGC- -5'
24568 5' -56.7 NC_005264.1 + 82538 0.66 0.895945
Target:  5'- gCUUCGcCGCCaagGCCGAGaGcGAGAacauCGCCGc -3'
miRNA:   3'- -GAAGCuGCGG---UGGCUC-C-UUCU----GCGGC- -5'
24568 5' -56.7 NC_005264.1 + 70160 0.66 0.895303
Target:  5'- --gCGGCGCCucacuaccgcaauACCugcGAGGuGGACGCCu -3'
miRNA:   3'- gaaGCUGCGG-------------UGG---CUCCuUCUGCGGc -5'
24568 5' -56.7 NC_005264.1 + 52178 0.67 0.889422
Target:  5'- -cUCGGCGCUccugauaaauguGCUGAGGGccgugGGGCGCgGu -3'
miRNA:   3'- gaAGCUGCGG------------UGGCUCCU-----UCUGCGgC- -5'
24568 5' -56.7 NC_005264.1 + 153956 0.67 0.889422
Target:  5'- --cCGACG-CGCUGAGGAcgagcGAUGCCa -3'
miRNA:   3'- gaaGCUGCgGUGGCUCCUu----CUGCGGc -5'
24568 5' -56.7 NC_005264.1 + 36096 0.67 0.889422
Target:  5'- uCUUCGGCGCgGCUGGcagauGGGuacuCGCCGg -3'
miRNA:   3'- -GAAGCUGCGgUGGCU-----CCUucu-GCGGC- -5'
24568 5' -56.7 NC_005264.1 + 128097 0.67 0.889422
Target:  5'- --cCGACG-CGCUGAGGAcgagcGAUGCCa -3'
miRNA:   3'- gaaGCUGCgGUGGCUCCUu----CUGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.