miRNA display CGI


Results 1 - 20 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24568 5' -56.7 NC_005264.1 + 5051 0.81 0.200252
Target:  5'- -gUgGGCGCCGCCuagcuGGGAAGACGCCGa -3'
miRNA:   3'- gaAgCUGCGGUGGc----UCCUUCUGCGGC- -5'
24568 5' -56.7 NC_005264.1 + 7001 0.72 0.601913
Target:  5'- --gCGACGCUugCGcGGuGGACGCCu -3'
miRNA:   3'- gaaGCUGCGGugGCuCCuUCUGCGGc -5'
24568 5' -56.7 NC_005264.1 + 7182 0.66 0.919806
Target:  5'- -gUUGGCGCCGcCCGcAGGGAcaaccccGCGCCa -3'
miRNA:   3'- gaAGCUGCGGU-GGC-UCCUUc------UGCGGc -5'
24568 5' -56.7 NC_005264.1 + 8127 0.67 0.889422
Target:  5'- ---aGACGCCgcgGCCGuGGAcGACGCg- -3'
miRNA:   3'- gaagCUGCGG---UGGCuCCUuCUGCGgc -5'
24568 5' -56.7 NC_005264.1 + 8555 0.69 0.759292
Target:  5'- -cUCgGACGCCAguggCGAGGAGGAaGCCa -3'
miRNA:   3'- gaAG-CUGCGGUg---GCUCCUUCUgCGGc -5'
24568 5' -56.7 NC_005264.1 + 9780 0.66 0.91418
Target:  5'- cCUUCGGCG-CAUgGGGGggGACuaCu -3'
miRNA:   3'- -GAAGCUGCgGUGgCUCCuuCUGcgGc -5'
24568 5' -56.7 NC_005264.1 + 10269 0.7 0.721173
Target:  5'- --gCGAUGCCcCCGGcGGGAGAuucCGCCGc -3'
miRNA:   3'- gaaGCUGCGGuGGCU-CCUUCU---GCGGC- -5'
24568 5' -56.7 NC_005264.1 + 10686 0.68 0.837941
Target:  5'- -gUCGACGCUcaggcaAUCGGGGAGGAacaGCUu -3'
miRNA:   3'- gaAGCUGCGG------UGGCUCCUUCUg--CGGc -5'
24568 5' -56.7 NC_005264.1 + 14460 0.67 0.853638
Target:  5'- -cUCGugGCCcgcgacgugcCCGAGGAAcGCGCUa -3'
miRNA:   3'- gaAGCugCGGu---------GGCUCCUUcUGCGGc -5'
24568 5' -56.7 NC_005264.1 + 17563 0.71 0.681881
Target:  5'- --aUGGCGUC-UCGAGGGcgAGACGCCGu -3'
miRNA:   3'- gaaGCUGCGGuGGCUCCU--UCUGCGGC- -5'
24568 5' -56.7 NC_005264.1 + 18503 0.68 0.804452
Target:  5'- aUUCGgcgaaaACGCCuuGCCGAucGggGGCGCCGu -3'
miRNA:   3'- gAAGC------UGCGG--UGGCUc-CuuCUGCGGC- -5'
24568 5' -56.7 NC_005264.1 + 18619 0.68 0.821526
Target:  5'- cCUUCGACcCCgcGCCGAGcgaGAGGGCGCg- -3'
miRNA:   3'- -GAAGCUGcGG--UGGCUC---CUUCUGCGgc -5'
24568 5' -56.7 NC_005264.1 + 18727 0.66 0.902248
Target:  5'- --cUGACGCCGgCGcgcccucagGGGGAGACGgCGc -3'
miRNA:   3'- gaaGCUGCGGUgGC---------UCCUUCUGCgGC- -5'
24568 5' -56.7 NC_005264.1 + 20326 0.66 0.908327
Target:  5'- -aUCGugGgCACCGgcaagcAGGAAacGCGCCGu -3'
miRNA:   3'- gaAGCugCgGUGGC------UCCUUc-UGCGGC- -5'
24568 5' -56.7 NC_005264.1 + 22238 0.69 0.759292
Target:  5'- --gCGGCGCUACCGuccAAGGCGUCGg -3'
miRNA:   3'- gaaGCUGCGGUGGCuccUUCUGCGGC- -5'
24568 5' -56.7 NC_005264.1 + 22880 0.66 0.908327
Target:  5'- -cUCGugGCUAuucauagguuUCGAGGAAGAgCGgCGa -3'
miRNA:   3'- gaAGCugCGGU----------GGCUCCUUCU-GCgGC- -5'
24568 5' -56.7 NC_005264.1 + 24870 0.67 0.868567
Target:  5'- uCUUCGGCGUUuCCGAGGu-GGCGgcuuCCGg -3'
miRNA:   3'- -GAAGCUGCGGuGGCUCCuuCUGC----GGC- -5'
24568 5' -56.7 NC_005264.1 + 26276 1.09 0.003017
Target:  5'- uCUUCGACGCCACCGAGGAAGACGCCGg -3'
miRNA:   3'- -GAAGCUGCGGUGGCUCCUUCUGCGGC- -5'
24568 5' -56.7 NC_005264.1 + 27956 0.67 0.868567
Target:  5'- -gUCGGCgGCCAuCCGuGGGAAGACGg-- -3'
miRNA:   3'- gaAGCUG-CGGU-GGC-UCCUUCUGCggc -5'
24568 5' -56.7 NC_005264.1 + 28879 0.67 0.868567
Target:  5'- --gCGaACGCCACCGc-GAAGACcCCGg -3'
miRNA:   3'- gaaGC-UGCGGUGGCucCUUCUGcGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.