miRNA display CGI


Results 1 - 20 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24568 5' -56.7 NC_005264.1 + 26276 1.09 0.003017
Target:  5'- uCUUCGACGCCACCGAGGAAGACGCCGg -3'
miRNA:   3'- -GAAGCUGCGGUGGCUCCUUCUGCGGC- -5'
24568 5' -56.7 NC_005264.1 + 60887 0.7 0.740414
Target:  5'- -cUCGGCGUaCGCCGcggugGGGccGACGCCGc -3'
miRNA:   3'- gaAGCUGCG-GUGGC-----UCCuuCUGCGGC- -5'
24568 5' -56.7 NC_005264.1 + 75086 0.7 0.749902
Target:  5'- uCUUCG-CGgCGCUGcGGcAGGCGCCGg -3'
miRNA:   3'- -GAAGCuGCgGUGGCuCCuUCUGCGGC- -5'
24568 5' -56.7 NC_005264.1 + 150830 0.66 0.919806
Target:  5'- --gCGGuCGCCGCCGcAGGucguGACGCg- -3'
miRNA:   3'- gaaGCU-GCGGUGGC-UCCuu--CUGCGgc -5'
24568 5' -56.7 NC_005264.1 + 94587 0.78 0.305701
Target:  5'- gUUCGAUGgCAUCGAGGAAGAcaagcccgcCGCCGg -3'
miRNA:   3'- gAAGCUGCgGUGGCUCCUUCU---------GCGGC- -5'
24568 5' -56.7 NC_005264.1 + 152303 0.74 0.494711
Target:  5'- -aUCcGCGCCcCUGAGGgcGGCGCCGc -3'
miRNA:   3'- gaAGcUGCGGuGGCUCCuuCUGCGGC- -5'
24568 5' -56.7 NC_005264.1 + 122712 0.73 0.532893
Target:  5'- -cUCGGCGgCGagaCGAGGAGGACGgCGa -3'
miRNA:   3'- gaAGCUGCgGUg--GCUCCUUCUGCgGC- -5'
24568 5' -56.7 NC_005264.1 + 121794 0.73 0.552381
Target:  5'- --cCGGCGCCguACCGucuGGGGAGugGUCGg -3'
miRNA:   3'- gaaGCUGCGG--UGGC---UCCUUCugCGGC- -5'
24568 5' -56.7 NC_005264.1 + 49588 0.71 0.690796
Target:  5'- --gCGcACGCCGCCGGcgaccaggacgacGGggGGCGCuCGg -3'
miRNA:   3'- gaaGC-UGCGGUGGCU-------------CCuuCUGCG-GC- -5'
24568 5' -56.7 NC_005264.1 + 37566 0.7 0.737549
Target:  5'- --gCG-CGCCGCCGcGGAGGgcgaagaacaagucGCGCCGa -3'
miRNA:   3'- gaaGCuGCGGUGGCuCCUUC--------------UGCGGC- -5'
24568 5' -56.7 NC_005264.1 + 159259 0.7 0.701639
Target:  5'- uCUUCG-CGCCuccuggcguuacGCgGAGGAAGugGCaCGa -3'
miRNA:   3'- -GAAGCuGCGG------------UGgCUCCUUCugCG-GC- -5'
24568 5' -56.7 NC_005264.1 + 17563 0.71 0.681881
Target:  5'- --aUGGCGUC-UCGAGGGcgAGACGCCGu -3'
miRNA:   3'- gaaGCUGCGGuGGCUCCU--UCUGCGGC- -5'
24568 5' -56.7 NC_005264.1 + 156383 0.83 0.160441
Target:  5'- gUUCGccGCGCCGCCGAGGAGuucuccgccagcGACGCCGc -3'
miRNA:   3'- gAAGC--UGCGGUGGCUCCUU------------CUGCGGC- -5'
24568 5' -56.7 NC_005264.1 + 149397 0.7 0.727944
Target:  5'- cCUUCGGCGCCGCCGcgucgcgucucggcGGcGgcGgucgcGCGCCGg -3'
miRNA:   3'- -GAAGCUGCGGUGGC--------------UC-CuuC-----UGCGGC- -5'
24568 5' -56.7 NC_005264.1 + 5051 0.81 0.200252
Target:  5'- -gUgGGCGCCGCCuagcuGGGAAGACGCCGa -3'
miRNA:   3'- gaAgCUGCGGUGGc----UCCUUCUGCGGC- -5'
24568 5' -56.7 NC_005264.1 + 154963 0.71 0.661966
Target:  5'- --cCGACGCCGCaucuGGGGcgccGACGCCGc -3'
miRNA:   3'- gaaGCUGCGGUGg---CUCCuu--CUGCGGC- -5'
24568 5' -56.7 NC_005264.1 + 134880 0.7 0.730834
Target:  5'- ---gGGCGCgCACCGuuguuuGGAAGACGCgGc -3'
miRNA:   3'- gaagCUGCG-GUGGCu-----CCUUCUGCGgC- -5'
24568 5' -56.7 NC_005264.1 + 160082 0.7 0.749902
Target:  5'- --aCGguACGgCGCCGGGGGAcGCGCCGu -3'
miRNA:   3'- gaaGC--UGCgGUGGCUCCUUcUGCGGC- -5'
24568 5' -56.7 NC_005264.1 + 69826 0.79 0.29214
Target:  5'- --aCGACGCCGCCGGGGugAAGGcCGCCc -3'
miRNA:   3'- gaaGCUGCGGUGGCUCC--UUCU-GCGGc -5'
24568 5' -56.7 NC_005264.1 + 148664 0.73 0.532893
Target:  5'- --gCGAuCGCCACCGAGGcGAGAaauaGCCu -3'
miRNA:   3'- gaaGCU-GCGGUGGCUCC-UUCUg---CGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.