miRNA display CGI


Results 1 - 20 of 302 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24569 3' -60.8 NC_005264.1 + 160333 0.65 0.751848
Target:  5'- gCGUGGUGGCggaggagggaguccAgauaggCCGCCCGcgGCcggGCCc -3'
miRNA:   3'- aGCGCCGCCG--------------Ua-----GGCGGGUuaCG---CGG- -5'
24569 3' -60.8 NC_005264.1 + 123638 0.66 0.745343
Target:  5'- cCGCGGCGGCGUaggCGCguucUCGAaaauCGCCg -3'
miRNA:   3'- aGCGCCGCCGUAg--GCG----GGUUac--GCGG- -5'
24569 3' -60.8 NC_005264.1 + 31191 0.66 0.745343
Target:  5'- -gGCGGCgGGCA-CCGCagaCCGAgGCGUg -3'
miRNA:   3'- agCGCCG-CCGUaGGCG---GGUUaCGCGg -5'
24569 3' -60.8 NC_005264.1 + 153121 0.66 0.745343
Target:  5'- cCGCGGCgGGCAcaaUgGCUCAGcgGCGCg -3'
miRNA:   3'- aGCGCCG-CCGUa--GgCGGGUUa-CGCGg -5'
24569 3' -60.8 NC_005264.1 + 106202 0.66 0.745343
Target:  5'- gCGCGGCGGCccuagcuagCgGCUCGugGCuGCCa -3'
miRNA:   3'- aGCGCCGCCGua-------GgCGGGUuaCG-CGG- -5'
24569 3' -60.8 NC_005264.1 + 158415 0.66 0.745343
Target:  5'- cCGCGGCGGCGUaggCGCguucUCGAaaauCGCCg -3'
miRNA:   3'- aGCGCCGCCGUAg--GCG----GGUUac--GCGG- -5'
24569 3' -60.8 NC_005264.1 + 128932 0.66 0.745343
Target:  5'- cCGCGGCgGGCAcaaUgGCUCAGcgGCGCg -3'
miRNA:   3'- aGCGCCG-CCGUa--GgCGGGUUa-CGCGg -5'
24569 3' -60.8 NC_005264.1 + 71998 0.66 0.745343
Target:  5'- cCGCgGGCGGCuUCgGCCgCuAUGCGg- -3'
miRNA:   3'- aGCG-CCGCCGuAGgCGG-GuUACGCgg -5'
24569 3' -60.8 NC_005264.1 + 60184 0.66 0.745343
Target:  5'- cCGCGGCcacgcGGcCGUCuCGCUCGcgGCcaccGCCg -3'
miRNA:   3'- aGCGCCG-----CC-GUAG-GCGGGUuaCG----CGG- -5'
24569 3' -60.8 NC_005264.1 + 147554 0.66 0.745343
Target:  5'- cCGCGGCGcgaaGUggCCGCCgAcGUGUGCg -3'
miRNA:   3'- aGCGCCGC----CGuaGGCGGgU-UACGCGg -5'
24569 3' -60.8 NC_005264.1 + 133138 0.66 0.74441
Target:  5'- gUCGCauggcauGGCGGCGaaaCGCCCuacUGCcaGCCu -3'
miRNA:   3'- -AGCG-------CCGCCGUag-GCGGGuu-ACG--CGG- -5'
24569 3' -60.8 NC_005264.1 + 81443 0.66 0.739732
Target:  5'- -aGCGGCGcGCAcCCGCaugCAucucggcaguaaacuGUGCGCUc -3'
miRNA:   3'- agCGCCGC-CGUaGGCGg--GU---------------UACGCGG- -5'
24569 3' -60.8 NC_005264.1 + 156618 0.66 0.735974
Target:  5'- cUCGCGGCGGCcgCgGCggggggUCAAaggacGCGUCu -3'
miRNA:   3'- -AGCGCCGCCGuaGgCG------GGUUa----CGCGG- -5'
24569 3' -60.8 NC_005264.1 + 72686 0.66 0.735974
Target:  5'- --cUGGCGGCGUUCGUgaCGcgGCGCa -3'
miRNA:   3'- agcGCCGCCGUAGGCGg-GUuaCGCGg -5'
24569 3' -60.8 NC_005264.1 + 126183 0.66 0.735974
Target:  5'- gUCGCGGCcaGGUccAUCCGCgCAcgG-GUCg -3'
miRNA:   3'- -AGCGCCG--CCG--UAGGCGgGUuaCgCGG- -5'
24569 3' -60.8 NC_005264.1 + 125435 0.66 0.735974
Target:  5'- cUCGCGGCGGCcgCgGCggggggUCAAaggacGCGUCu -3'
miRNA:   3'- -AGCGCCGCCGuaGgCG------GGUUa----CGCGG- -5'
24569 3' -60.8 NC_005264.1 + 155870 0.66 0.735974
Target:  5'- gUCGCGGCcaGGUccAUCCGCgCAcgG-GUCg -3'
miRNA:   3'- -AGCGCCG--CCG--UAGGCGgGUuaCgCGG- -5'
24569 3' -60.8 NC_005264.1 + 89925 0.66 0.735032
Target:  5'- --aCGGCaGCAacgugucgcucauUCCGCCCAucgGCgGCCg -3'
miRNA:   3'- agcGCCGcCGU-------------AGGCGGGUua-CG-CGG- -5'
24569 3' -60.8 NC_005264.1 + 69643 0.66 0.730312
Target:  5'- -gGCugGGCaGCAccguaccucagcugcUCCGCCCAGUcuggagcgGCGCCc -3'
miRNA:   3'- agCG--CCGcCGU---------------AGGCGGGUUA--------CGCGG- -5'
24569 3' -60.8 NC_005264.1 + 1247 0.66 0.726521
Target:  5'- uUUGCGGCGaGCcUCCGCaCGGUGgaGCa -3'
miRNA:   3'- -AGCGCCGC-CGuAGGCGgGUUACg-CGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.