miRNA display CGI


Results 1 - 20 of 302 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24569 3' -60.8 NC_005264.1 + 160333 0.65 0.751848
Target:  5'- gCGUGGUGGCggaggagggaguccAgauaggCCGCCCGcgGCcggGCCc -3'
miRNA:   3'- aGCGCCGCCG--------------Ua-----GGCGGGUuaCG---CGG- -5'
24569 3' -60.8 NC_005264.1 + 10641 0.66 0.726521
Target:  5'- -gGCGGCGGuCAcUCUGCCCu---CGUCu -3'
miRNA:   3'- agCGCCGCC-GU-AGGCGGGuuacGCGG- -5'
24569 3' -60.8 NC_005264.1 + 121106 0.66 0.724621
Target:  5'- gUCGCGGCGGgGUCUGUagcuuucUGCCa -3'
miRNA:   3'- -AGCGCCGCCgUAGGCGgguuac-GCGG- -5'
24569 3' -60.8 NC_005264.1 + 31309 0.66 0.716992
Target:  5'- gCGCGGCguugcuGGCGcUCuggCGCUaCAAUGCGCUa -3'
miRNA:   3'- aGCGCCG------CCGU-AG---GCGG-GUUACGCGG- -5'
24569 3' -60.8 NC_005264.1 + 127437 0.66 0.716992
Target:  5'- cUGCuGCGGC-UUCGgCCGAUG-GCCg -3'
miRNA:   3'- aGCGcCGCCGuAGGCgGGUUACgCGG- -5'
24569 3' -60.8 NC_005264.1 + 52523 0.66 0.716992
Target:  5'- gUUGUGG-GGCAgcCCGCCCA--GCGaCCc -3'
miRNA:   3'- -AGCGCCgCCGUa-GGCGGGUuaCGC-GG- -5'
24569 3' -60.8 NC_005264.1 + 104609 0.66 0.707397
Target:  5'- uUCGacauCGGCGGCuUCCaGCUC--UGCGUCg -3'
miRNA:   3'- -AGC----GCCGCCGuAGG-CGGGuuACGCGG- -5'
24569 3' -60.8 NC_005264.1 + 33782 0.66 0.707397
Target:  5'- -aGCGGCGGCAagccUCGUCCGAacaugGCuCCg -3'
miRNA:   3'- agCGCCGCCGUa---GGCGGGUUa----CGcGG- -5'
24569 3' -60.8 NC_005264.1 + 49767 0.66 0.707397
Target:  5'- gUCGcCGGCGGCGUgCGCCgAGaagGUGa- -3'
miRNA:   3'- -AGC-GCCGCCGUAgGCGGgUUa--CGCgg -5'
24569 3' -60.8 NC_005264.1 + 121635 0.66 0.726521
Target:  5'- aCGUGuccGCGGCcUCCGCUuucuuccuaggCAGgccgGCGCCg -3'
miRNA:   3'- aGCGC---CGCCGuAGGCGG-----------GUUa---CGCGG- -5'
24569 3' -60.8 NC_005264.1 + 92888 0.66 0.726521
Target:  5'- cCGCGuGCGGCaAUaaGCuCCAGgagGCgGCCg -3'
miRNA:   3'- aGCGC-CGCCG-UAggCG-GGUUa--CG-CGG- -5'
24569 3' -60.8 NC_005264.1 + 1247 0.66 0.726521
Target:  5'- uUUGCGGCGaGCcUCCGCaCGGUGgaGCa -3'
miRNA:   3'- -AGCGCCGC-CGuAGGCGgGUUACg-CGg -5'
24569 3' -60.8 NC_005264.1 + 147554 0.66 0.745343
Target:  5'- cCGCGGCGcgaaGUggCCGCCgAcGUGUGCg -3'
miRNA:   3'- aGCGCCGC----CGuaGGCGGgU-UACGCGg -5'
24569 3' -60.8 NC_005264.1 + 71998 0.66 0.745343
Target:  5'- cCGCgGGCGGCuUCgGCCgCuAUGCGg- -3'
miRNA:   3'- aGCG-CCGCCGuAGgCGG-GuUACGCgg -5'
24569 3' -60.8 NC_005264.1 + 128932 0.66 0.745343
Target:  5'- cCGCGGCgGGCAcaaUgGCUCAGcgGCGCg -3'
miRNA:   3'- aGCGCCG-CCGUa--GgCGGGUUa-CGCGg -5'
24569 3' -60.8 NC_005264.1 + 158415 0.66 0.745343
Target:  5'- cCGCGGCGGCGUaggCGCguucUCGAaaauCGCCg -3'
miRNA:   3'- aGCGCCGCCGUAg--GCG----GGUUac--GCGG- -5'
24569 3' -60.8 NC_005264.1 + 106202 0.66 0.745343
Target:  5'- gCGCGGCGGCccuagcuagCgGCUCGugGCuGCCa -3'
miRNA:   3'- aGCGCCGCCGua-------GgCGGGUuaCG-CGG- -5'
24569 3' -60.8 NC_005264.1 + 133138 0.66 0.74441
Target:  5'- gUCGCauggcauGGCGGCGaaaCGCCCuacUGCcaGCCu -3'
miRNA:   3'- -AGCG-------CCGCCGUag-GCGGGuu-ACG--CGG- -5'
24569 3' -60.8 NC_005264.1 + 125435 0.66 0.735974
Target:  5'- cUCGCGGCGGCcgCgGCggggggUCAAaggacGCGUCu -3'
miRNA:   3'- -AGCGCCGCCGuaGgCG------GGUUa----CGCGG- -5'
24569 3' -60.8 NC_005264.1 + 155870 0.66 0.735974
Target:  5'- gUCGCGGCcaGGUccAUCCGCgCAcgG-GUCg -3'
miRNA:   3'- -AGCGCCG--CCG--UAGGCGgGUuaCgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.