miRNA display CGI


Results 1 - 20 of 302 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24569 3' -60.8 NC_005264.1 + 27850 1.12 0.000739
Target:  5'- gUCGCGGCGGCAUCCGCCCAAUGCGCCg -3'
miRNA:   3'- -AGCGCCGCCGUAGGCGGGUUACGCGG- -5'
24569 3' -60.8 NC_005264.1 + 91399 0.83 0.078984
Target:  5'- -gGCGGCGGCAgagauaGCCCAGUGCGCg -3'
miRNA:   3'- agCGCCGCCGUagg---CGGGUUACGCGg -5'
24569 3' -60.8 NC_005264.1 + 149882 0.79 0.13442
Target:  5'- -gGCGGCGGCGcgCCGCCCGGUaggcaacgGCGUCu -3'
miRNA:   3'- agCGCCGCCGUa-GGCGGGUUA--------CGCGG- -5'
24569 3' -60.8 NC_005264.1 + 132170 0.79 0.13442
Target:  5'- -gGCGGCGGCGcgCCGCCCGGUaggcaacgGCGUCu -3'
miRNA:   3'- agCGCCGCCGUa-GGCGGGUUA--------CGCGG- -5'
24569 3' -60.8 NC_005264.1 + 103935 0.79 0.137804
Target:  5'- aUCGaggaGGCGGCAUCCGCU--AUGCGCg -3'
miRNA:   3'- -AGCg---CCGCCGUAGGCGGguUACGCGg -5'
24569 3' -60.8 NC_005264.1 + 22242 0.79 0.144806
Target:  5'- -gGCGGCGGCGcuaCCGUCCAagGCGUCg -3'
miRNA:   3'- agCGCCGCCGUa--GGCGGGUuaCGCGG- -5'
24569 3' -60.8 NC_005264.1 + 130637 0.79 0.144806
Target:  5'- -gGCGGcCGGCGUCCGCCgCGAcuuUGUGCUg -3'
miRNA:   3'- agCGCC-GCCGUAGGCGG-GUU---ACGCGG- -5'
24569 3' -60.8 NC_005264.1 + 151416 0.79 0.144806
Target:  5'- -gGCGGcCGGCGUCCGCCgCGAcuuUGUGCUg -3'
miRNA:   3'- agCGCC-GCCGUAGGCGG-GUU---ACGCGG- -5'
24569 3' -60.8 NC_005264.1 + 131045 0.79 0.148428
Target:  5'- cUGCGGCGGCGaccgCCGCCCuuaggcgaaGCGCCc -3'
miRNA:   3'- aGCGCCGCCGUa---GGCGGGuua------CGCGG- -5'
24569 3' -60.8 NC_005264.1 + 151008 0.79 0.148428
Target:  5'- cUGCGGCGGCGaccgCCGCCCuuaggcgaaGCGCCc -3'
miRNA:   3'- aGCGCCGCCGUa---GGCGGGuua------CGCGG- -5'
24569 3' -60.8 NC_005264.1 + 68446 0.78 0.167801
Target:  5'- -gGCGGCaGCAgcaggCCGCCCGcgGCGCg -3'
miRNA:   3'- agCGCCGcCGUa----GGCGGGUuaCGCGg -5'
24569 3' -60.8 NC_005264.1 + 83732 0.77 0.180486
Target:  5'- aCGCGGCGGCAgagaUGCCCucUGCGgCa -3'
miRNA:   3'- aGCGCCGCCGUag--GCGGGuuACGCgG- -5'
24569 3' -60.8 NC_005264.1 + 75213 0.77 0.180486
Target:  5'- aCGCGGCuGCAUCgGCCC--UGCGCg -3'
miRNA:   3'- aGCGCCGcCGUAGgCGGGuuACGCGg -5'
24569 3' -60.8 NC_005264.1 + 117430 0.77 0.185346
Target:  5'- gUCGCGGCGcGCAgggcgCCGCCCuccaucguuugccGCGCCu -3'
miRNA:   3'- -AGCGCCGC-CGUa----GGCGGGuua----------CGCGG- -5'
24569 3' -60.8 NC_005264.1 + 23908 0.77 0.194014
Target:  5'- -aGCGGCGGCGUgUGCCCuuUGgGCg -3'
miRNA:   3'- agCGCCGCCGUAgGCGGGuuACgCGg -5'
24569 3' -60.8 NC_005264.1 + 100919 0.77 0.194014
Target:  5'- uUCGCGcaaGCGGCGg-CGCCCG-UGCGCCu -3'
miRNA:   3'- -AGCGC---CGCCGUagGCGGGUuACGCGG- -5'
24569 3' -60.8 NC_005264.1 + 29057 0.76 0.208421
Target:  5'- uUCGCGGUGGCGUUCGCCgCGcgGU-CCa -3'
miRNA:   3'- -AGCGCCGCCGUAGGCGG-GUuaCGcGG- -5'
24569 3' -60.8 NC_005264.1 + 40981 0.76 0.208421
Target:  5'- cCGCGGCaagcGGC-UCCGCUCucgGCGCCg -3'
miRNA:   3'- aGCGCCG----CCGuAGGCGGGuuaCGCGG- -5'
24569 3' -60.8 NC_005264.1 + 16196 0.76 0.208421
Target:  5'- gCGCGGCGGUcgUCGCCUgccauGAUGCGgCu -3'
miRNA:   3'- aGCGCCGCCGuaGGCGGG-----UUACGCgG- -5'
24569 3' -60.8 NC_005264.1 + 36876 0.76 0.213425
Target:  5'- gCGCGGCaGaAUCCGCCau-UGCGCCa -3'
miRNA:   3'- aGCGCCGcCgUAGGCGGguuACGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.