miRNA display CGI


Results 1 - 20 of 302 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24569 3' -60.8 NC_005264.1 + 1247 0.66 0.726521
Target:  5'- uUUGCGGCGaGCcUCCGCaCGGUGgaGCa -3'
miRNA:   3'- -AGCGCCGC-CGuAGGCGgGUUACg-CGg -5'
24569 3' -60.8 NC_005264.1 + 3427 0.68 0.626219
Target:  5'- -gGCGGCGcGCcccacuucucagggGUCCGCCgCccgugGCGCCc -3'
miRNA:   3'- agCGCCGC-CG--------------UAGGCGG-Guua--CGCGG- -5'
24569 3' -60.8 NC_005264.1 + 4431 0.66 0.704506
Target:  5'- gCGCGGCGGCAagaggcUCCGCagaGAUGgaaucauuauggcaCGCg -3'
miRNA:   3'- aGCGCCGCCGU------AGGCGgg-UUAC--------------GCGg -5'
24569 3' -60.8 NC_005264.1 + 5999 0.66 0.697742
Target:  5'- gCGCGGCGGU---CGCU--GUGCGCa -3'
miRNA:   3'- aGCGCCGCCGuagGCGGguUACGCGg -5'
24569 3' -60.8 NC_005264.1 + 6838 0.67 0.639021
Target:  5'- gCGUGGCGGCG-CCGgCUAuaugucgggGCGCa -3'
miRNA:   3'- aGCGCCGCCGUaGGCgGGUua-------CGCGg -5'
24569 3' -60.8 NC_005264.1 + 7396 0.76 0.233933
Target:  5'- aUCGCGGCcccGGCGccgUCGUCCAuugguucGUGCGCCg -3'
miRNA:   3'- -AGCGCCG---CCGUa--GGCGGGU-------UACGCGG- -5'
24569 3' -60.8 NC_005264.1 + 7543 0.69 0.570364
Target:  5'- cCGCGGCGGCcgCCaGauuuugCCGGUGCGa- -3'
miRNA:   3'- aGCGCCGCCGuaGG-Cg-----GGUUACGCgg -5'
24569 3' -60.8 NC_005264.1 + 8262 0.69 0.522399
Target:  5'- -aGCGGCgcccuGGUGUCCGCCUcguUGCagGCCg -3'
miRNA:   3'- agCGCCG-----CCGUAGGCGGGuu-ACG--CGG- -5'
24569 3' -60.8 NC_005264.1 + 8406 0.69 0.560669
Target:  5'- aUCGUGGCcGCcguuUCCGCgC-AUGUGCCu -3'
miRNA:   3'- -AGCGCCGcCGu---AGGCGgGuUACGCGG- -5'
24569 3' -60.8 NC_005264.1 + 8811 0.72 0.382155
Target:  5'- aCGUGGCGGUgaagcgCCuaCCGGUGCGCg -3'
miRNA:   3'- aGCGCCGCCGua----GGcgGGUUACGCGg -5'
24569 3' -60.8 NC_005264.1 + 9562 0.72 0.402408
Target:  5'- -gGUGGCGGCuagcagguaaaacgUCGCCCGcaguaguccccccccAUGCGCCg -3'
miRNA:   3'- agCGCCGCCGua------------GGCGGGU---------------UACGCGG- -5'
24569 3' -60.8 NC_005264.1 + 10076 0.67 0.658694
Target:  5'- cCGCGGCGGaaucucCCGCCgGggGCaucgcgGCCg -3'
miRNA:   3'- aGCGCCGCCgua---GGCGGgUuaCG------CGG- -5'
24569 3' -60.8 NC_005264.1 + 10641 0.66 0.726521
Target:  5'- -gGCGGCGGuCAcUCUGCCCu---CGUCu -3'
miRNA:   3'- agCGCCGCC-GU-AGGCGGGuuacGCGG- -5'
24569 3' -60.8 NC_005264.1 + 13534 0.67 0.639021
Target:  5'- cCGUGGa-GCAUCgauaaCCAGUGCGCCa -3'
miRNA:   3'- aGCGCCgcCGUAGgcg--GGUUACGCGG- -5'
24569 3' -60.8 NC_005264.1 + 13578 0.68 0.589871
Target:  5'- cUCGCuGGCaaagGGCuUCgGCCCca-GCGCCa -3'
miRNA:   3'- -AGCG-CCG----CCGuAGgCGGGuuaCGCGG- -5'
24569 3' -60.8 NC_005264.1 + 14949 0.66 0.697742
Target:  5'- aCGCGGCagccgaccuggaGGCAUCUGCaaGAUGCa-- -3'
miRNA:   3'- aGCGCCG------------CCGUAGGCGggUUACGcgg -5'
24569 3' -60.8 NC_005264.1 + 15487 0.72 0.397486
Target:  5'- aUCGCGGCgGGCAUgggccuggccuggUUGCUCAAUG-GCCa -3'
miRNA:   3'- -AGCGCCG-CCGUA-------------GGCGGGUUACgCGG- -5'
24569 3' -60.8 NC_005264.1 + 16196 0.76 0.208421
Target:  5'- gCGCGGCGGUcgUCGCCUgccauGAUGCGgCu -3'
miRNA:   3'- aGCGCCGCCGuaGGCGGG-----UUACGCgG- -5'
24569 3' -60.8 NC_005264.1 + 16580 0.68 0.609491
Target:  5'- -gGCGGCGGCGcacaugacUCCGgCCGacccagaacauuGUGUGUCc -3'
miRNA:   3'- agCGCCGCCGU--------AGGCgGGU------------UACGCGG- -5'
24569 3' -60.8 NC_005264.1 + 16606 0.67 0.668505
Target:  5'- cCGCGGCagucgagcGGCccuugccuccCCGagugCCAAUGCGCCa -3'
miRNA:   3'- aGCGCCG--------CCGua--------GGCg---GGUUACGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.