miRNA display CGI


Results 1 - 20 of 302 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24569 3' -60.8 NC_005264.1 + 27850 1.12 0.000739
Target:  5'- gUCGCGGCGGCAUCCGCCCAAUGCGCCg -3'
miRNA:   3'- -AGCGCCGCCGUAGGCGGGUUACGCGG- -5'
24569 3' -60.8 NC_005264.1 + 149423 0.74 0.281805
Target:  5'- -gGCGGCGGCgGUCgCGCgCCGGUGCGg- -3'
miRNA:   3'- agCGCCGCCG-UAG-GCG-GGUUACGCgg -5'
24569 3' -60.8 NC_005264.1 + 126894 0.74 0.294762
Target:  5'- -gGgGGCGGCGUCggCGCCCcaGAUGCGgCg -3'
miRNA:   3'- agCgCCGCCGUAG--GCGGG--UUACGCgG- -5'
24569 3' -60.8 NC_005264.1 + 147554 0.66 0.745343
Target:  5'- cCGCGGCGcgaaGUggCCGCCgAcGUGUGCg -3'
miRNA:   3'- aGCGCCGC----CGuaGGCGGgU-UACGCGg -5'
24569 3' -60.8 NC_005264.1 + 131045 0.79 0.148428
Target:  5'- cUGCGGCGGCGaccgCCGCCCuuaggcgaaGCGCCc -3'
miRNA:   3'- aGCGCCGCCGUa---GGCGGGuua------CGCGG- -5'
24569 3' -60.8 NC_005264.1 + 75213 0.77 0.180486
Target:  5'- aCGCGGCuGCAUCgGCCC--UGCGCg -3'
miRNA:   3'- aGCGCCGcCGUAGgCGGGuuACGCGg -5'
24569 3' -60.8 NC_005264.1 + 117430 0.77 0.185346
Target:  5'- gUCGCGGCGcGCAgggcgCCGCCCuccaucguuugccGCGCCu -3'
miRNA:   3'- -AGCGCCGC-CGUa----GGCGGGuua----------CGCGG- -5'
24569 3' -60.8 NC_005264.1 + 100919 0.77 0.194014
Target:  5'- uUCGCGcaaGCGGCGg-CGCCCG-UGCGCCu -3'
miRNA:   3'- -AGCGC---CGCCGUagGCGGGUuACGCGG- -5'
24569 3' -60.8 NC_005264.1 + 7396 0.76 0.233933
Target:  5'- aUCGCGGCcccGGCGccgUCGUCCAuugguucGUGCGCCg -3'
miRNA:   3'- -AGCGCCG---CCGUa--GGCGGGU-------UACGCGG- -5'
24569 3' -60.8 NC_005264.1 + 17369 0.75 0.263223
Target:  5'- -gGCGGCGGCgcgGUCUGUgUAcGUGCGCCg -3'
miRNA:   3'- agCGCCGCCG---UAGGCGgGU-UACGCGG- -5'
24569 3' -60.8 NC_005264.1 + 154816 0.76 0.23448
Target:  5'- gCGCGGUGGCG-CCGUCguGgcggGCGCCu -3'
miRNA:   3'- aGCGCCGCCGUaGGCGGguUa---CGCGG- -5'
24569 3' -60.8 NC_005264.1 + 122571 0.76 0.229058
Target:  5'- aCGCGGCGGCGUCCaGCaUCucucGUGCCa -3'
miRNA:   3'- aGCGCCGCCGUAGG-CG-GGuua-CGCGG- -5'
24569 3' -60.8 NC_005264.1 + 149882 0.79 0.13442
Target:  5'- -gGCGGCGGCGcgCCGCCCGGUaggcaacgGCGUCu -3'
miRNA:   3'- agCGCCGCCGUa-GGCGGGUUA--------CGCGG- -5'
24569 3' -60.8 NC_005264.1 + 39814 0.75 0.257253
Target:  5'- gCGCGGCacGCAUCCGCCUAgAUGgaGCCu -3'
miRNA:   3'- aGCGCCGc-CGUAGGCGGGU-UACg-CGG- -5'
24569 3' -60.8 NC_005264.1 + 103935 0.79 0.137804
Target:  5'- aUCGaggaGGCGGCAUCCGCU--AUGCGCg -3'
miRNA:   3'- -AGCg---CCGCCGUAGGCGGguUACGCGg -5'
24569 3' -60.8 NC_005264.1 + 71855 0.76 0.218531
Target:  5'- gUCGCGGCGGCGguguUCCGCgaCGGcacgcggGCGCCc -3'
miRNA:   3'- -AGCGCCGCCGU----AGGCGg-GUUa------CGCGG- -5'
24569 3' -60.8 NC_005264.1 + 150990 0.75 0.263223
Target:  5'- -aGUGGCGGCGacgggCCGCguguCCGAUGCGCg -3'
miRNA:   3'- agCGCCGCCGUa----GGCG----GGUUACGCGg -5'
24569 3' -60.8 NC_005264.1 + 117046 0.74 0.288874
Target:  5'- gCGCGGCGGCccagaccgcaauagCCGCUCcg-GCGCCc -3'
miRNA:   3'- aGCGCCGCCGua------------GGCGGGuuaCGCGG- -5'
24569 3' -60.8 NC_005264.1 + 151416 0.79 0.144806
Target:  5'- -gGCGGcCGGCGUCCGCCgCGAcuuUGUGCUg -3'
miRNA:   3'- agCGCC-GCCGUAGGCGG-GUU---ACGCGG- -5'
24569 3' -60.8 NC_005264.1 + 83732 0.77 0.180486
Target:  5'- aCGCGGCGGCAgagaUGCCCucUGCGgCa -3'
miRNA:   3'- aGCGCCGCCGUag--GCGGGuuACGCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.