miRNA display CGI


Results 1 - 20 of 20 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24569 5' -57.4 NC_005264.1 + 116650 0.66 0.872858
Target:  5'- -aG-CG-GUCc-GCCGGCGUgCUCGGCg -3'
miRNA:   3'- aaCaGCaCAGacCGGUCGCA-GAGCCG- -5'
24569 5' -57.4 NC_005264.1 + 67934 0.66 0.86551
Target:  5'- -aGUCGUGUagcgGGguucCCGGCGcCUgCGGCu -3'
miRNA:   3'- aaCAGCACAga--CC----GGUCGCaGA-GCCG- -5'
24569 5' -57.4 NC_005264.1 + 47221 0.66 0.86551
Target:  5'- -cGUCGaUGgCUGGUCGGagcUCUUGGCg -3'
miRNA:   3'- aaCAGC-ACaGACCGGUCgc-AGAGCCG- -5'
24569 5' -57.4 NC_005264.1 + 79907 0.66 0.857954
Target:  5'- uUUG-CGUGcgCgUGGCCGaCGUCUgCGGCg -3'
miRNA:   3'- -AACaGCACa-G-ACCGGUcGCAGA-GCCG- -5'
24569 5' -57.4 NC_005264.1 + 124225 0.66 0.850197
Target:  5'- cUGUCGUGUCUcGcGCC-GCGgcgaGGCg -3'
miRNA:   3'- aACAGCACAGA-C-CGGuCGCagagCCG- -5'
24569 5' -57.4 NC_005264.1 + 157828 0.66 0.850197
Target:  5'- cUGUCGUGUCUcGcGCC-GCGgcgaGGCg -3'
miRNA:   3'- aACAGCACAGA-C-CGGuCGCagagCCG- -5'
24569 5' -57.4 NC_005264.1 + 73589 0.66 0.842245
Target:  5'- gUGUCGaacUUGGUCAGCGgguguuggCUUGGCa -3'
miRNA:   3'- aACAGCacaGACCGGUCGCa-------GAGCCG- -5'
24569 5' -57.4 NC_005264.1 + 88595 0.66 0.841439
Target:  5'- -cGcCGUGUCUggagcgcGGCCAGCGcgCUaCGuGCg -3'
miRNA:   3'- aaCaGCACAGA-------CCGGUCGCa-GA-GC-CG- -5'
24569 5' -57.4 NC_005264.1 + 55144 0.66 0.834105
Target:  5'- -cGUgCGcUGUgCUGGCgCAGCGUaugCGGCc -3'
miRNA:   3'- aaCA-GC-ACA-GACCG-GUCGCAga-GCCG- -5'
24569 5' -57.4 NC_005264.1 + 82199 0.67 0.79981
Target:  5'- -gGcCGUGUCgUGGCCGcGCGUCcaucguccUCGGg -3'
miRNA:   3'- aaCaGCACAG-ACCGGU-CGCAG--------AGCCg -5'
24569 5' -57.4 NC_005264.1 + 126337 0.68 0.772492
Target:  5'- -cGUCGgcucaGUC-GGCCGGCG-CUaaCGGCg -3'
miRNA:   3'- aaCAGCa----CAGaCCGGUCGCaGA--GCCG- -5'
24569 5' -57.4 NC_005264.1 + 155715 0.68 0.772492
Target:  5'- -cGUCGgcucaGUC-GGCCGGCG-CUaaCGGCg -3'
miRNA:   3'- aaCAGCa----CAGaCCGGUCGCaGA--GCCG- -5'
24569 5' -57.4 NC_005264.1 + 85096 0.68 0.724614
Target:  5'- --uUUGUGg-UGGCCGGCGaguccCUCGGCg -3'
miRNA:   3'- aacAGCACagACCGGUCGCa----GAGCCG- -5'
24569 5' -57.4 NC_005264.1 + 88094 0.69 0.704849
Target:  5'- -aGUgCGcGUCgGGCaCAGCGUCggcCGGCg -3'
miRNA:   3'- aaCA-GCaCAGaCCG-GUCGCAGa--GCCG- -5'
24569 5' -57.4 NC_005264.1 + 156160 0.7 0.664665
Target:  5'- cUGUCGUG-CgGGCUuGUuUCUCGGCg -3'
miRNA:   3'- aACAGCACaGaCCGGuCGcAGAGCCG- -5'
24569 5' -57.4 NC_005264.1 + 125892 0.7 0.664665
Target:  5'- cUGUCGUG-CgGGCUuGUuUCUCGGCg -3'
miRNA:   3'- aACAGCACaGaCCGGuCGcAGAGCCG- -5'
24569 5' -57.4 NC_005264.1 + 56217 0.7 0.634223
Target:  5'- -gGUCGUcgagaucaCUGGCgAGCGUCgcgCGGCu -3'
miRNA:   3'- aaCAGCAca------GACCGgUCGCAGa--GCCG- -5'
24569 5' -57.4 NC_005264.1 + 53260 0.71 0.583552
Target:  5'- -gGgcgCGUGUCUGGCUuGCuGUCccgCGGCg -3'
miRNA:   3'- aaCa--GCACAGACCGGuCG-CAGa--GCCG- -5'
24569 5' -57.4 NC_005264.1 + 21930 0.74 0.404462
Target:  5'- -gGUUGUGgagCUGGUCGGCGaCUCGGg -3'
miRNA:   3'- aaCAGCACa--GACCGGUCGCaGAGCCg -5'
24569 5' -57.4 NC_005264.1 + 27885 1.1 0.001901
Target:  5'- uUUGUCGUGUCUGGCCAGCGUCUCGGCg -3'
miRNA:   3'- -AACAGCACAGACCGGUCGCAGAGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.