miRNA display CGI


Results 1 - 20 of 159 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24570 3' -58.2 NC_005264.1 + 31248 0.65 0.870768
Target:  5'- gCGCGcCGCucccuccacaccuaGGCGCCaGGUGccgcgcacaugcaGAAGCGUGa -3'
miRNA:   3'- -GCGC-GCG--------------CUGCGGcCCAU-------------UUUCGCGC- -5'
24570 3' -58.2 NC_005264.1 + 29903 0.66 0.869333
Target:  5'- gGCGUGCGGCGCUaccccgucggcgcuaGGG-AGGuacGCGCu -3'
miRNA:   3'- gCGCGCGCUGCGG---------------CCCaUUUu--CGCGc -5'
24570 3' -58.2 NC_005264.1 + 110849 0.66 0.867166
Target:  5'- cCGCGCGCGACGuCCGcaauagcuacAGCGaCGa -3'
miRNA:   3'- -GCGCGCGCUGC-GGCccauuu----UCGC-GC- -5'
24570 3' -58.2 NC_005264.1 + 47400 0.66 0.86644
Target:  5'- aGUgGCGCGugGuuGGGU----GCGCc -3'
miRNA:   3'- gCG-CGCGCugCggCCCAuuuuCGCGc -5'
24570 3' -58.2 NC_005264.1 + 4192 0.66 0.86644
Target:  5'- gGUGCaGCGGuauuucuucauCGCCGGGUGcc-GCGUGc -3'
miRNA:   3'- gCGCG-CGCU-----------GCGGCCCAUuuuCGCGC- -5'
24570 3' -58.2 NC_005264.1 + 58943 0.66 0.86644
Target:  5'- cCGCGCGUG-CGCCuc-UGAuAGCGCa -3'
miRNA:   3'- -GCGCGCGCuGCGGcccAUUuUCGCGc -5'
24570 3' -58.2 NC_005264.1 + 158501 0.66 0.86644
Target:  5'- aCGCGCGCucagcCGCCaGGGgcAGgccuGCGCu -3'
miRNA:   3'- -GCGCGCGcu---GCGG-CCCauUUu---CGCGc -5'
24570 3' -58.2 NC_005264.1 + 95396 0.66 0.86644
Target:  5'- -aCGCG-GGCGCagGGGUGuccuGCGCGg -3'
miRNA:   3'- gcGCGCgCUGCGg-CCCAUuuu-CGCGC- -5'
24570 3' -58.2 NC_005264.1 + 123552 0.66 0.86644
Target:  5'- aCGCGCGCucagcCGCCaGGGgcAGgccuGCGCu -3'
miRNA:   3'- -GCGCGCGcu---GCGG-CCCauUUu---CGCGc -5'
24570 3' -58.2 NC_005264.1 + 30255 0.66 0.86644
Target:  5'- gGCGCgGCGGCGCCGac--GAGGgGCu -3'
miRNA:   3'- gCGCG-CGCUGCGGCccauUUUCgCGc -5'
24570 3' -58.2 NC_005264.1 + 81228 0.66 0.864981
Target:  5'- aCGCGCcagugaggguaGACGgCGGGUA--GGCGCc -3'
miRNA:   3'- -GCGCGcg---------CUGCgGCCCAUuuUCGCGc -5'
24570 3' -58.2 NC_005264.1 + 118074 0.66 0.862041
Target:  5'- gCGCGCGUGACucccuucgugguagaGCgGcGGUAcgaAGAGgGCGa -3'
miRNA:   3'- -GCGCGCGCUG---------------CGgC-CCAU---UUUCgCGC- -5'
24570 3' -58.2 NC_005264.1 + 119902 0.66 0.8613
Target:  5'- -aCGCGCGGUGCCuggacaccuaagcacGGGUGGAgcggggaggggggGGCGCGu -3'
miRNA:   3'- gcGCGCGCUGCGG---------------CCCAUUU-------------UCGCGC- -5'
24570 3' -58.2 NC_005264.1 + 162151 0.66 0.8613
Target:  5'- -aCGCGCGGUGCCuggacaccuaagcacGGGUGGAgcggggaggggggGGCGCGu -3'
miRNA:   3'- gcGCGCGCUGCGG---------------CCCAUUU-------------UCGCGC- -5'
24570 3' -58.2 NC_005264.1 + 132477 0.66 0.859068
Target:  5'- aCGCG-GCGGCGCCgaaGGGgcuccuGCGgGg -3'
miRNA:   3'- -GCGCgCGCUGCGG---CCCauuuu-CGCgC- -5'
24570 3' -58.2 NC_005264.1 + 65365 0.66 0.859068
Target:  5'- cCGCuuGaCGcCGCCGGGUAGAgucucgcaGGCGaCGg -3'
miRNA:   3'- -GCGcgC-GCuGCGGCCCAUUU--------UCGC-GC- -5'
24570 3' -58.2 NC_005264.1 + 71851 0.66 0.859068
Target:  5'- aCGCGuCGCGGCGgCGGuGUucc-GCGaCGg -3'
miRNA:   3'- -GCGC-GCGCUGCgGCC-CAuuuuCGC-GC- -5'
24570 3' -58.2 NC_005264.1 + 97166 0.66 0.859068
Target:  5'- aCGCGUGuCGaACGCaGGGUgGGAAGgGCu -3'
miRNA:   3'- -GCGCGC-GC-UGCGgCCCA-UUUUCgCGc -5'
24570 3' -58.2 NC_005264.1 + 108720 0.66 0.859068
Target:  5'- aGaCGUGCGACGCagugugccacGGUGGuGGCGCa -3'
miRNA:   3'- gC-GCGCGCUGCGgc--------CCAUUuUCGCGc -5'
24570 3' -58.2 NC_005264.1 + 124682 0.66 0.859068
Target:  5'- gGC-CGUGAUGCUGGGcGGcGGgGCGg -3'
miRNA:   3'- gCGcGCGCUGCGGCCCaUUuUCgCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.