Results 1 - 20 of 159 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24570 | 3' | -58.2 | NC_005264.1 | + | 31248 | 0.65 | 0.870768 |
Target: 5'- gCGCGcCGCucccuccacaccuaGGCGCCaGGUGccgcgcacaugcaGAAGCGUGa -3' miRNA: 3'- -GCGC-GCG--------------CUGCGGcCCAU-------------UUUCGCGC- -5' |
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24570 | 3' | -58.2 | NC_005264.1 | + | 80389 | 0.66 | 0.851503 |
Target: 5'- uGCGCGUGGCGUuugCGuGGccccaGAAAGUGCa -3' miRNA: 3'- gCGCGCGCUGCG---GC-CCa----UUUUCGCGc -5' |
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24570 | 3' | -58.2 | NC_005264.1 | + | 68613 | 0.66 | 0.843749 |
Target: 5'- gGC-CGCGGCGCCG-GUAguccAGAGCGa- -3' miRNA: 3'- gCGcGCGCUGCGGCcCAU----UUUCGCgc -5' |
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24570 | 3' | -58.2 | NC_005264.1 | + | 84735 | 0.66 | 0.843749 |
Target: 5'- aGCGgGCuguucuuuGCGUCGGGgAAcAGCGCGa -3' miRNA: 3'- gCGCgCGc-------UGCGGCCCaUUuUCGCGC- -5' |
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24570 | 3' | -58.2 | NC_005264.1 | + | 133424 | 0.66 | 0.842964 |
Target: 5'- uGCGCGuCGGCGCUuGGcuucgAAAgcucuacGGCGCGg -3' miRNA: 3'- gCGCGC-GCUGCGGcCCa----UUU-------UCGCGC- -5' |
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24570 | 3' | -58.2 | NC_005264.1 | + | 148475 | 0.66 | 0.840597 |
Target: 5'- aCGCGCGCGGucuccagaaucuccCGCCGGGcaaaucugucccgUGAAAcgccGcCGCGa -3' miRNA: 3'- -GCGCGCGCU--------------GCGGCCC-------------AUUUU----C-GCGC- -5' |
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24570 | 3' | -58.2 | NC_005264.1 | + | 8099 | 0.66 | 0.83901 |
Target: 5'- aCGCGCGCGuugcuagccagaGCGUgGGGgacgucguacGCGCGc -3' miRNA: 3'- -GCGCGCGC------------UGCGgCCCauuuu-----CGCGC- -5' |
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24570 | 3' | -58.2 | NC_005264.1 | + | 75989 | 0.66 | 0.835815 |
Target: 5'- gCGCGCcuacggacgGCGACGaCCuGGaggcGAGCGCGa -3' miRNA: 3'- -GCGCG---------CGCUGC-GGcCCauu-UUCGCGC- -5' |
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24570 | 3' | -58.2 | NC_005264.1 | + | 93358 | 0.66 | 0.835815 |
Target: 5'- gGCaCGCGGCGCUGGGgccuuGGUucuccGCGg -3' miRNA: 3'- gCGcGCGCUGCGGCCCauuu-UCG-----CGC- -5' |
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24570 | 3' | -58.2 | NC_005264.1 | + | 108720 | 0.66 | 0.859068 |
Target: 5'- aGaCGUGCGACGCagugugccacGGUGGuGGCGCa -3' miRNA: 3'- gC-GCGCGCUGCGgc--------CCAUUuUCGCGc -5' |
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24570 | 3' | -58.2 | NC_005264.1 | + | 149576 | 0.66 | 0.859068 |
Target: 5'- aCGCG-GCGGCGCCgaaGGGgcuccuGCGgGg -3' miRNA: 3'- -GCGCgCGCUGCGG---CCCauuuu-CGCgC- -5' |
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24570 | 3' | -58.2 | NC_005264.1 | + | 124682 | 0.66 | 0.859068 |
Target: 5'- gGC-CGUGAUGCUGGGcGGcGGgGCGg -3' miRNA: 3'- gCGcGCGCUGCGGCCCaUUuUCgCGC- -5' |
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24570 | 3' | -58.2 | NC_005264.1 | + | 30255 | 0.66 | 0.86644 |
Target: 5'- gGCGCgGCGGCGCCGac--GAGGgGCu -3' miRNA: 3'- gCGCG-CGCUGCGGCccauUUUCgCGc -5' |
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24570 | 3' | -58.2 | NC_005264.1 | + | 95396 | 0.66 | 0.86644 |
Target: 5'- -aCGCG-GGCGCagGGGUGuccuGCGCGg -3' miRNA: 3'- gcGCGCgCUGCGg-CCCAUuuu-CGCGC- -5' |
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24570 | 3' | -58.2 | NC_005264.1 | + | 123552 | 0.66 | 0.86644 |
Target: 5'- aCGCGCGCucagcCGCCaGGGgcAGgccuGCGCu -3' miRNA: 3'- -GCGCGCGcu---GCGG-CCCauUUu---CGCGc -5' |
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24570 | 3' | -58.2 | NC_005264.1 | + | 81228 | 0.66 | 0.864981 |
Target: 5'- aCGCGCcagugaggguaGACGgCGGGUA--GGCGCc -3' miRNA: 3'- -GCGCGcg---------CUGCgGCCCAUuuUCGCGc -5' |
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24570 | 3' | -58.2 | NC_005264.1 | + | 118074 | 0.66 | 0.862041 |
Target: 5'- gCGCGCGUGACucccuucgugguagaGCgGcGGUAcgaAGAGgGCGa -3' miRNA: 3'- -GCGCGCGCUG---------------CGgC-CCAU---UUUCgCGC- -5' |
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24570 | 3' | -58.2 | NC_005264.1 | + | 119902 | 0.66 | 0.8613 |
Target: 5'- -aCGCGCGGUGCCuggacaccuaagcacGGGUGGAgcggggaggggggGGCGCGu -3' miRNA: 3'- gcGCGCGCUGCGG---------------CCCAUUU-------------UCGCGC- -5' |
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24570 | 3' | -58.2 | NC_005264.1 | + | 97166 | 0.66 | 0.859068 |
Target: 5'- aCGCGUGuCGaACGCaGGGUgGGAAGgGCu -3' miRNA: 3'- -GCGCGC-GC-UGCGgCCCA-UUUUCgCGc -5' |
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24570 | 3' | -58.2 | NC_005264.1 | + | 50329 | 0.66 | 0.859068 |
Target: 5'- uCGUGCGCcauCGCaGGGaAAAAGCGUu -3' miRNA: 3'- -GCGCGCGcu-GCGgCCCaUUUUCGCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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