miRNA display CGI


Results 1 - 20 of 159 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24570 3' -58.2 NC_005264.1 + 28045 1.08 0.002663
Target:  5'- gCGCGCGCGACGCCGGGUAAAAGCGCGc -3'
miRNA:   3'- -GCGCGCGCUGCGGCCCAUUUUCGCGC- -5'
24570 3' -58.2 NC_005264.1 + 16565 0.8 0.187435
Target:  5'- gGUGgGCGGCGCCGGGgcGGcGGCGCa -3'
miRNA:   3'- gCGCgCGCUGCGGCCCauUU-UCGCGc -5'
24570 3' -58.2 NC_005264.1 + 136652 0.76 0.3067
Target:  5'- gGCuGCGCGGCGCCGucUcuGAGCGCGg -3'
miRNA:   3'- gCG-CGCGCUGCGGCccAuuUUCGCGC- -5'
24570 3' -58.2 NC_005264.1 + 69819 0.75 0.350033
Target:  5'- gGCGCGgaCGACGCCgccgGGGUGAAGGcCGCc -3'
miRNA:   3'- gCGCGC--GCUGCGG----CCCAUUUUC-GCGc -5'
24570 3' -58.2 NC_005264.1 + 19421 0.75 0.356897
Target:  5'- gGCGa--GGCGCCGGGUGuggccgcGGGGCGCGg -3'
miRNA:   3'- gCGCgcgCUGCGGCCCAU-------UUUCGCGC- -5'
24570 3' -58.2 NC_005264.1 + 124654 0.74 0.397549
Target:  5'- gGcCGCGCGACGCUaGGUGuccccacAGCGCGg -3'
miRNA:   3'- gC-GCGCGCUGCGGcCCAUuu-----UCGCGC- -5'
24570 3' -58.2 NC_005264.1 + 157399 0.74 0.397549
Target:  5'- gGcCGCGCGACGCUaGGUGuccccacAGCGCGg -3'
miRNA:   3'- gC-GCGCGCUGCGGcCCAUuu-----UCGCGC- -5'
24570 3' -58.2 NC_005264.1 + 156556 0.74 0.440176
Target:  5'- gGCGCgGCGaACGUCGGGgu---GCGCGg -3'
miRNA:   3'- gCGCG-CGC-UGCGGCCCauuuuCGCGC- -5'
24570 3' -58.2 NC_005264.1 + 125497 0.74 0.440176
Target:  5'- gGCGCgGCGaACGUCGGGgu---GCGCGg -3'
miRNA:   3'- gCGCG-CGC-UGCGGCCCauuuuCGCGC- -5'
24570 3' -58.2 NC_005264.1 + 155774 0.73 0.457941
Target:  5'- aGCGCGaCGGCGCCGGcc---GGCGCc -3'
miRNA:   3'- gCGCGC-GCUGCGGCCcauuuUCGCGc -5'
24570 3' -58.2 NC_005264.1 + 126278 0.73 0.457941
Target:  5'- aGCGCGaCGGCGCCGGcc---GGCGCc -3'
miRNA:   3'- gCGCGC-GCUGCGGCCcauuuUCGCGc -5'
24570 3' -58.2 NC_005264.1 + 6839 0.73 0.466966
Target:  5'- gGCGUgGCGGCGCCGGcuauauGUcgGGGCGCa -3'
miRNA:   3'- gCGCG-CGCUGCGGCC------CAuuUUCGCGc -5'
24570 3' -58.2 NC_005264.1 + 121913 0.73 0.476082
Target:  5'- gGgGCGCGGCGCggCGGG-GAGGGCGaCGg -3'
miRNA:   3'- gCgCGCGCUGCG--GCCCaUUUUCGC-GC- -5'
24570 3' -58.2 NC_005264.1 + 56506 0.73 0.476082
Target:  5'- gGUGCGCGACGgCGGc----AGCGCGg -3'
miRNA:   3'- gCGCGCGCUGCgGCCcauuuUCGCGC- -5'
24570 3' -58.2 NC_005264.1 + 160139 0.73 0.476082
Target:  5'- gGgGCGCGGCGCggCGGG-GAGGGCGaCGg -3'
miRNA:   3'- gCgCGCGCUGCG--GCCCaUUUUCGC-GC- -5'
24570 3' -58.2 NC_005264.1 + 64151 0.73 0.485286
Target:  5'- gGCGcCGCGAUccgGCCGGuGUGcAAGCGCc -3'
miRNA:   3'- gCGC-GCGCUG---CGGCC-CAUuUUCGCGc -5'
24570 3' -58.2 NC_005264.1 + 2380 0.73 0.494574
Target:  5'- aGCGCGCaugGGCGCCGGcaaUGGAGGgGCa -3'
miRNA:   3'- gCGCGCG---CUGCGGCCc--AUUUUCgCGc -5'
24570 3' -58.2 NC_005264.1 + 142787 0.72 0.501123
Target:  5'- aCGCGgacagguaucuggaCGUGACGCugcaCGGGUGcGAGCGCGc -3'
miRNA:   3'- -GCGC--------------GCGCUGCG----GCCCAUuUUCGCGC- -5'
24570 3' -58.2 NC_005264.1 + 67044 0.72 0.503941
Target:  5'- cCGCGCGCGaucuauuuucGCGUCGGGcGAcGGCGUc -3'
miRNA:   3'- -GCGCGCGC----------UGCGGCCCaUUuUCGCGc -5'
24570 3' -58.2 NC_005264.1 + 4961 0.72 0.503941
Target:  5'- uGCGCGaaCGGCGCCGcGcaGAAGGCGCa -3'
miRNA:   3'- gCGCGC--GCUGCGGC-CcaUUUUCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.