miRNA display CGI


Results 21 - 40 of 159 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24570 3' -58.2 NC_005264.1 + 108720 0.66 0.859068
Target:  5'- aGaCGUGCGACGCagugugccacGGUGGuGGCGCa -3'
miRNA:   3'- gC-GCGCGCUGCGgc--------CCAUUuUCGCGc -5'
24570 3' -58.2 NC_005264.1 + 124682 0.66 0.859068
Target:  5'- gGC-CGUGAUGCUGGGcGGcGGgGCGg -3'
miRNA:   3'- gCGcGCGCUGCGGCCCaUUuUCgCGC- -5'
24570 3' -58.2 NC_005264.1 + 97166 0.66 0.859068
Target:  5'- aCGCGUGuCGaACGCaGGGUgGGAAGgGCu -3'
miRNA:   3'- -GCGCGC-GC-UGCGgCCCA-UUUUCgCGc -5'
24570 3' -58.2 NC_005264.1 + 149576 0.66 0.859068
Target:  5'- aCGCG-GCGGCGCCgaaGGGgcuccuGCGgGg -3'
miRNA:   3'- -GCGCgCGCUGCGG---CCCauuuu-CGCgC- -5'
24570 3' -58.2 NC_005264.1 + 50329 0.66 0.859068
Target:  5'- uCGUGCGCcauCGCaGGGaAAAAGCGUu -3'
miRNA:   3'- -GCGCGCGcu-GCGgCCCaUUUUCGCGc -5'
24570 3' -58.2 NC_005264.1 + 80389 0.66 0.851503
Target:  5'- uGCGCGUGGCGUuugCGuGGccccaGAAAGUGCa -3'
miRNA:   3'- gCGCGCGCUGCG---GC-CCa----UUUUCGCGc -5'
24570 3' -58.2 NC_005264.1 + 68613 0.66 0.843749
Target:  5'- gGC-CGCGGCGCCG-GUAguccAGAGCGa- -3'
miRNA:   3'- gCGcGCGCUGCGGCcCAU----UUUCGCgc -5'
24570 3' -58.2 NC_005264.1 + 84735 0.66 0.843749
Target:  5'- aGCGgGCuguucuuuGCGUCGGGgAAcAGCGCGa -3'
miRNA:   3'- gCGCgCGc-------UGCGGCCCaUUuUCGCGC- -5'
24570 3' -58.2 NC_005264.1 + 6910 0.66 0.843749
Target:  5'- aGCGCGCGGCuuuCCGu----GGGCGCGa -3'
miRNA:   3'- gCGCGCGCUGc--GGCccauuUUCGCGC- -5'
24570 3' -58.2 NC_005264.1 + 40271 0.66 0.842964
Target:  5'- aCGCgGUGCGGCGCUGcGugacguuugucguGUGAAAGCuGCGc -3'
miRNA:   3'- -GCG-CGCGCUGCGGC-C-------------CAUUUUCG-CGC- -5'
24570 3' -58.2 NC_005264.1 + 133424 0.66 0.842964
Target:  5'- uGCGCGuCGGCGCUuGGcuucgAAAgcucuacGGCGCGg -3'
miRNA:   3'- gCGCGC-GCUGCGGcCCa----UUU-------UCGCGC- -5'
24570 3' -58.2 NC_005264.1 + 54423 0.66 0.842964
Target:  5'- gGCGCGCcgacuagGGCGUgGGGUuguuuuuuGCGCa -3'
miRNA:   3'- gCGCGCG-------CUGCGgCCCAuuuu----CGCGc -5'
24570 3' -58.2 NC_005264.1 + 79910 0.66 0.842177
Target:  5'- gCGUGCGCGugGCCGacgucu-GCgGCGg -3'
miRNA:   3'- -GCGCGCGCugCGGCccauuuuCG-CGC- -5'
24570 3' -58.2 NC_005264.1 + 148475 0.66 0.840597
Target:  5'- aCGCGCGCGGucuccagaaucuccCGCCGGGcaaaucugucccgUGAAAcgccGcCGCGa -3'
miRNA:   3'- -GCGCGCGCU--------------GCGGCCC-------------AUUUU----C-GCGC- -5'
24570 3' -58.2 NC_005264.1 + 8099 0.66 0.83901
Target:  5'- aCGCGCGCGuugcuagccagaGCGUgGGGgacgucguacGCGCGc -3'
miRNA:   3'- -GCGCGCGC------------UGCGgCCCauuuu-----CGCGC- -5'
24570 3' -58.2 NC_005264.1 + 159994 0.66 0.835815
Target:  5'- aGCGgGCGACGgCGc----GAGCGCGa -3'
miRNA:   3'- gCGCgCGCUGCgGCccauuUUCGCGC- -5'
24570 3' -58.2 NC_005264.1 + 93358 0.66 0.835815
Target:  5'- gGCaCGCGGCGCUGGGgccuuGGUucuccGCGg -3'
miRNA:   3'- gCGcGCGCUGCGGCCCauuu-UCG-----CGC- -5'
24570 3' -58.2 NC_005264.1 + 122059 0.66 0.835815
Target:  5'- aGCGgGCGACGgCGc----GAGCGCGa -3'
miRNA:   3'- gCGCgCGCUGCgGCccauuUUCGCGC- -5'
24570 3' -58.2 NC_005264.1 + 75989 0.66 0.835815
Target:  5'- gCGCGCcuacggacgGCGACGaCCuGGaggcGAGCGCGa -3'
miRNA:   3'- -GCGCG---------CGCUGC-GGcCCauu-UUCGCGC- -5'
24570 3' -58.2 NC_005264.1 + 8716 0.66 0.835815
Target:  5'- gCGCGCGCGugGCCGccGUuucGGCuCGc -3'
miRNA:   3'- -GCGCGCGCugCGGCc-CAuuuUCGcGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.