miRNA display CGI


Results 1 - 20 of 159 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24570 3' -58.2 NC_005264.1 + 2380 0.73 0.494574
Target:  5'- aGCGCGCaugGGCGCCGGcaaUGGAGGgGCa -3'
miRNA:   3'- gCGCGCG---CUGCGGCCc--AUUUUCgCGc -5'
24570 3' -58.2 NC_005264.1 + 4192 0.66 0.86644
Target:  5'- gGUGCaGCGGuauuucuucauCGCCGGGUGcc-GCGUGc -3'
miRNA:   3'- gCGCG-CGCU-----------GCGGCCCAUuuuCGCGC- -5'
24570 3' -58.2 NC_005264.1 + 4961 0.72 0.503941
Target:  5'- uGCGCGaaCGGCGCCGcGcaGAAGGCGCa -3'
miRNA:   3'- gCGCGC--GCUGCGGC-CcaUUUUCGCGc -5'
24570 3' -58.2 NC_005264.1 + 5236 0.67 0.802394
Target:  5'- uGCGCGagcagGACGCCcugcuGGGcuacggGGAAGCGCc -3'
miRNA:   3'- gCGCGCg----CUGCGG-----CCCa-----UUUUCGCGc -5'
24570 3' -58.2 NC_005264.1 + 5573 0.68 0.737672
Target:  5'- aGCGgGaaauacaGACGCggcuacuCGGGUAAaGAGCGCGa -3'
miRNA:   3'- gCGCgCg------CUGCG-------GCCCAUU-UUCGCGC- -5'
24570 3' -58.2 NC_005264.1 + 6839 0.73 0.466966
Target:  5'- gGCGUgGCGGCGCCGGcuauauGUcgGGGCGCa -3'
miRNA:   3'- gCGCG-CGCUGCGGCC------CAuuUUCGCGc -5'
24570 3' -58.2 NC_005264.1 + 6910 0.66 0.843749
Target:  5'- aGCGCGCGGCuuuCCGu----GGGCGCGa -3'
miRNA:   3'- gCGCGCGCUGc--GGCccauuUUCGCGC- -5'
24570 3' -58.2 NC_005264.1 + 7004 0.67 0.830969
Target:  5'- uGCGgGCGGCGCCaacgugaaaguuauuGGGgucu-GCGUGc -3'
miRNA:   3'- gCGCgCGCUGCGG---------------CCCauuuuCGCGC- -5'
24570 3' -58.2 NC_005264.1 + 7082 0.67 0.810987
Target:  5'- aGC-CGCG-CGCUGGGacu--GCGCGg -3'
miRNA:   3'- gCGcGCGCuGCGGCCCauuuuCGCGC- -5'
24570 3' -58.2 NC_005264.1 + 7763 0.71 0.581227
Target:  5'- -cCGCaGCGGCGCgGGGUAGGcGGCGgGg -3'
miRNA:   3'- gcGCG-CGCUGCGgCCCAUUU-UCGCgC- -5'
24570 3' -58.2 NC_005264.1 + 8099 0.66 0.83901
Target:  5'- aCGCGCGCGuugcuagccagaGCGUgGGGgacgucguacGCGCGc -3'
miRNA:   3'- -GCGCGCGC------------UGCGgCCCauuuu-----CGCGC- -5'
24570 3' -58.2 NC_005264.1 + 8271 0.72 0.513385
Target:  5'- uCGCGuCGCGAUGCCaGG-AGGAGgGCa -3'
miRNA:   3'- -GCGC-GCGCUGCGGcCCaUUUUCgCGc -5'
24570 3' -58.2 NC_005264.1 + 8716 0.66 0.835815
Target:  5'- gCGCGCGCGugGCCGccGUuucGGCuCGc -3'
miRNA:   3'- -GCGCGCGCugCGGCc-CAuuuUCGcGC- -5'
24570 3' -58.2 NC_005264.1 + 8826 0.67 0.78478
Target:  5'- uCGCGCGaaacguaGACGUgGcGGUGAA-GCGCc -3'
miRNA:   3'- -GCGCGCg------CUGCGgC-CCAUUUuCGCGc -5'
24570 3' -58.2 NC_005264.1 + 14048 0.72 0.513385
Target:  5'- aCGUG-GCGGgGCCGGGUGGGAacGUGCa -3'
miRNA:   3'- -GCGCgCGCUgCGGCCCAUUUU--CGCGc -5'
24570 3' -58.2 NC_005264.1 + 16565 0.8 0.187435
Target:  5'- gGUGgGCGGCGCCGGGgcGGcGGCGCa -3'
miRNA:   3'- gCGCgCGCUGCGGCCCauUU-UCGCGc -5'
24570 3' -58.2 NC_005264.1 + 18054 0.7 0.650715
Target:  5'- aGCG-GCGGCGCCGcGaGccAGGGCGCGc -3'
miRNA:   3'- gCGCgCGCUGCGGC-C-CauUUUCGCGC- -5'
24570 3' -58.2 NC_005264.1 + 18425 0.69 0.670552
Target:  5'- gGCGCGCccucucgcucGGCGCgGGGUcGAAGGaCGUGu -3'
miRNA:   3'- gCGCGCG----------CUGCGgCCCA-UUUUC-GCGC- -5'
24570 3' -58.2 NC_005264.1 + 19421 0.75 0.356897
Target:  5'- gGCGa--GGCGCCGGGUGuggccgcGGGGCGCGg -3'
miRNA:   3'- gCGCgcgCUGCGGCCCAU-------UUUCGCGC- -5'
24570 3' -58.2 NC_005264.1 + 19935 0.71 0.571386
Target:  5'- uCGCgGCGCGAUGCUGGGggcacGGCGa- -3'
miRNA:   3'- -GCG-CGCGCUGCGGCCCauuu-UCGCgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.