miRNA display CGI


Results 1 - 20 of 159 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24570 3' -58.2 NC_005264.1 + 28045 1.08 0.002663
Target:  5'- gCGCGCGCGACGCCGGGUAAAAGCGCGc -3'
miRNA:   3'- -GCGCGCGCUGCGGCCCAUUUUCGCGC- -5'
24570 3' -58.2 NC_005264.1 + 77227 0.71 0.551831
Target:  5'- gGCGCGCuuccuaaaGACGCUgGGGUAAAGGUGa- -3'
miRNA:   3'- gCGCGCG--------CUGCGG-CCCAUUUUCGCgc -5'
24570 3' -58.2 NC_005264.1 + 75687 0.71 0.561585
Target:  5'- uCGCGCGCaGCGCCGucuuucGGCGCGa -3'
miRNA:   3'- -GCGCGCGcUGCGGCccauuuUCGCGC- -5'
24570 3' -58.2 NC_005264.1 + 31248 0.65 0.870768
Target:  5'- gCGCGcCGCucccuccacaccuaGGCGCCaGGUGccgcgcacaugcaGAAGCGUGa -3'
miRNA:   3'- -GCGC-GCG--------------CUGCGGcCCAU-------------UUUCGCGC- -5'
24570 3' -58.2 NC_005264.1 + 124654 0.74 0.397549
Target:  5'- gGcCGCGCGACGCUaGGUGuccccacAGCGCGg -3'
miRNA:   3'- gC-GCGCGCUGCGGcCCAUuu-----UCGCGC- -5'
24570 3' -58.2 NC_005264.1 + 125497 0.74 0.440176
Target:  5'- gGCGCgGCGaACGUCGGGgu---GCGCGg -3'
miRNA:   3'- gCGCG-CGC-UGCGGCCCauuuuCGCGC- -5'
24570 3' -58.2 NC_005264.1 + 121913 0.73 0.476082
Target:  5'- gGgGCGCGGCGCggCGGG-GAGGGCGaCGg -3'
miRNA:   3'- gCgCGCGCUGCG--GCCCaUUUUCGC-GC- -5'
24570 3' -58.2 NC_005264.1 + 64151 0.73 0.485286
Target:  5'- gGCGcCGCGAUccgGCCGGuGUGcAAGCGCc -3'
miRNA:   3'- gCGC-GCGCUG---CGGCC-CAUuUUCGCGc -5'
24570 3' -58.2 NC_005264.1 + 14048 0.72 0.513385
Target:  5'- aCGUG-GCGGgGCCGGGUGGGAacGUGCa -3'
miRNA:   3'- -GCGCgCGCUgCGGCCCAUUUU--CGCGc -5'
24570 3' -58.2 NC_005264.1 + 136792 0.72 0.542129
Target:  5'- uCG-GCGCGugGCCGGGcggacAAAGCugGCGg -3'
miRNA:   3'- -GCgCGCGCugCGGCCCau---UUUCG--CGC- -5'
24570 3' -58.2 NC_005264.1 + 162693 0.72 0.532483
Target:  5'- gGCGCGCugcGCGCCGGcGUuAAGGCGg- -3'
miRNA:   3'- gCGCGCGc--UGCGGCC-CAuUUUCGCgc -5'
24570 3' -58.2 NC_005264.1 + 64790 0.72 0.503941
Target:  5'- uGCGCGCaGCGCCcccauGGGcaccGGAAGCGCa -3'
miRNA:   3'- gCGCGCGcUGCGG-----CCCa---UUUUCGCGc -5'
24570 3' -58.2 NC_005264.1 + 16565 0.8 0.187435
Target:  5'- gGUGgGCGGCGCCGGGgcGGcGGCGCa -3'
miRNA:   3'- gCGCgCGCUGCGGCCCauUU-UCGCGc -5'
24570 3' -58.2 NC_005264.1 + 20236 0.72 0.532483
Target:  5'- cCGCGCGUGACggguggGCagGGGUugcGGCGCGg -3'
miRNA:   3'- -GCGCGCGCUG------CGg-CCCAuuuUCGCGC- -5'
24570 3' -58.2 NC_005264.1 + 69819 0.75 0.350033
Target:  5'- gGCGCGgaCGACGCCgccgGGGUGAAGGcCGCc -3'
miRNA:   3'- gCGCGC--GCUGCGG----CCCAUUUUC-GCGc -5'
24570 3' -58.2 NC_005264.1 + 142787 0.72 0.501123
Target:  5'- aCGCGgacagguaucuggaCGUGACGCugcaCGGGUGcGAGCGCGc -3'
miRNA:   3'- -GCGC--------------GCGCUGCG----GCCCAUuUUCGCGC- -5'
24570 3' -58.2 NC_005264.1 + 59708 0.72 0.532483
Target:  5'- cCGCGCGCcGCGCCGGcGgcuAccGCGCc -3'
miRNA:   3'- -GCGCGCGcUGCGGCC-Cau-UuuCGCGc -5'
24570 3' -58.2 NC_005264.1 + 110564 0.71 0.558654
Target:  5'- gCGCGUaccgcauuguagauGcCGugGCCGGGUGAguAGGCGgGg -3'
miRNA:   3'- -GCGCG--------------C-GCugCGGCCCAUU--UUCGCgC- -5'
24570 3' -58.2 NC_005264.1 + 19421 0.75 0.356897
Target:  5'- gGCGa--GGCGCCGGGUGuggccgcGGGGCGCGg -3'
miRNA:   3'- gCGCgcgCUGCGGCCCAU-------UUUCGCGC- -5'
24570 3' -58.2 NC_005264.1 + 155774 0.73 0.457941
Target:  5'- aGCGCGaCGGCGCCGGcc---GGCGCc -3'
miRNA:   3'- gCGCGC-GCUGCGGCCcauuuUCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.