miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24570 5' -56.4 NC_005264.1 + 3307 0.66 0.898948
Target:  5'- cGCGCGGGa----UCGCG-CGCCGUg -3'
miRNA:   3'- uUGUGCCCgaaugAGCGCaGUGGCGu -5'
24570 5' -56.4 NC_005264.1 + 75321 0.66 0.896346
Target:  5'- -cCGCGGGCggcucaucgaUCGCGgaGCCGCAa -3'
miRNA:   3'- uuGUGCCCGaaug------AGCGCagUGGCGU- -5'
24570 5' -56.4 NC_005264.1 + 150806 0.66 0.892375
Target:  5'- -uCGCGGGCgc-UUCGCcuaagggcggcgGUCGCCGCc -3'
miRNA:   3'- uuGUGCCCGaauGAGCG------------CAGUGGCGu -5'
24570 5' -56.4 NC_005264.1 + 131246 0.66 0.892375
Target:  5'- -uCGCGGGCgc-UUCGCcuaagggcggcgGUCGCCGCc -3'
miRNA:   3'- uuGUGCCCGaauGAGCG------------CAGUGGCGu -5'
24570 5' -56.4 NC_005264.1 + 101239 0.66 0.885573
Target:  5'- cGGCgACGGGCUUccaGCUCGCGuacaugauuUCAUCGa- -3'
miRNA:   3'- -UUG-UGCCCGAA---UGAGCGC---------AGUGGCgu -5'
24570 5' -56.4 NC_005264.1 + 122937 0.66 0.885573
Target:  5'- uACACGGGCgacuuuuCUCaGgGUgGCCGCc -3'
miRNA:   3'- uUGUGCCCGaau----GAG-CgCAgUGGCGu -5'
24570 5' -56.4 NC_005264.1 + 159115 0.66 0.885573
Target:  5'- uACACGGGCgacuuuuCUCaGgGUgGCCGCc -3'
miRNA:   3'- uUGUGCCCGaau----GAG-CgCAgUGGCGu -5'
24570 5' -56.4 NC_005264.1 + 127331 0.66 0.878545
Target:  5'- cGACGgGGGCaccUGCgccgCgGCGUCGCCGUc -3'
miRNA:   3'- -UUGUgCCCGa--AUGa---G-CGCAGUGGCGu -5'
24570 5' -56.4 NC_005264.1 + 42041 0.66 0.878545
Target:  5'- cGCACGcGGCcUAUccaaUCGCGUUGcCCGCGg -3'
miRNA:   3'- uUGUGC-CCGaAUG----AGCGCAGU-GGCGU- -5'
24570 5' -56.4 NC_005264.1 + 154722 0.66 0.878545
Target:  5'- cGACGgGGGCaccUGCgccgCgGCGUCGCCGUc -3'
miRNA:   3'- -UUGUgCCCGa--AUGa---G-CGCAGUGGCGu -5'
24570 5' -56.4 NC_005264.1 + 157608 0.66 0.871298
Target:  5'- -gUACGcGGCaucuguCUCgGCGUCGCCGCu -3'
miRNA:   3'- uuGUGC-CCGaau---GAG-CGCAGUGGCGu -5'
24570 5' -56.4 NC_005264.1 + 55035 0.66 0.871298
Target:  5'- gGAUGCGGGCg-GCUCccaggucaCGUCGCCGUg -3'
miRNA:   3'- -UUGUGCCCGaaUGAGc-------GCAGUGGCGu -5'
24570 5' -56.4 NC_005264.1 + 61822 0.66 0.871298
Target:  5'- cGC-CGGGCagugccugGCUCGCcugCGCCGCGu -3'
miRNA:   3'- uUGuGCCCGaa------UGAGCGca-GUGGCGU- -5'
24570 5' -56.4 NC_005264.1 + 124445 0.66 0.871298
Target:  5'- -gUACGcGGCaucuguCUCgGCGUCGCCGCu -3'
miRNA:   3'- uuGUGC-CCGaau---GAG-CGCAGUGGCGu -5'
24570 5' -56.4 NC_005264.1 + 75117 0.66 0.869822
Target:  5'- gAGCugGGGCgcagucaaaugGCcgCGCGUCagaugggaaACCGCAc -3'
miRNA:   3'- -UUGugCCCGaa---------UGa-GCGCAG---------UGGCGU- -5'
24570 5' -56.4 NC_005264.1 + 52775 0.66 0.869081
Target:  5'- uACGCGGuCguggUACUCGCGUacugucgcuugccgCGCCGCu -3'
miRNA:   3'- uUGUGCCcGa---AUGAGCGCA--------------GUGGCGu -5'
24570 5' -56.4 NC_005264.1 + 20254 0.67 0.863834
Target:  5'- --gACGGuGCUUGCUcgcuaCGCGggGCCGCGu -3'
miRNA:   3'- uugUGCC-CGAAUGA-----GCGCagUGGCGU- -5'
24570 5' -56.4 NC_005264.1 + 65314 0.67 0.856161
Target:  5'- aGGCAaccgaGGGCUUgGCgUCGCGuUCACCGgAg -3'
miRNA:   3'- -UUGUg----CCCGAA-UG-AGCGC-AGUGGCgU- -5'
24570 5' -56.4 NC_005264.1 + 113252 0.67 0.856161
Target:  5'- uACGCGaGGCauguccguCUCGCGuaagaUCGCCGCGg -3'
miRNA:   3'- uUGUGC-CCGaau-----GAGCGC-----AGUGGCGU- -5'
24570 5' -56.4 NC_005264.1 + 43858 0.67 0.848285
Target:  5'- cGCugGGGCcgGCaaagacgucuUCGuCGUCGCCGUu -3'
miRNA:   3'- uUGugCCCGaaUG----------AGC-GCAGUGGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.