miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24570 5' -56.4 NC_005264.1 + 28079 1.06 0.003756
Target:  5'- gAACACGGGCUUACUCGCGUCACCGCAa -3'
miRNA:   3'- -UUGUGCCCGAAUGAGCGCAGUGGCGU- -5'
24570 5' -56.4 NC_005264.1 + 60453 0.79 0.252678
Target:  5'- cGACGCGGcGCUcaccgcaGCUCGCGUgACCGCAu -3'
miRNA:   3'- -UUGUGCC-CGAa------UGAGCGCAgUGGCGU- -5'
24570 5' -56.4 NC_005264.1 + 33599 0.76 0.349695
Target:  5'- -uCGCGGGCgUACUCGCccaacaUCACCGCGg -3'
miRNA:   3'- uuGUGCCCGaAUGAGCGc-----AGUGGCGU- -5'
24570 5' -56.4 NC_005264.1 + 33486 0.76 0.357558
Target:  5'- --uGCGGGCguggGCUUagGCGUCGCCGCGu -3'
miRNA:   3'- uugUGCCCGaa--UGAG--CGCAGUGGCGU- -5'
24570 5' -56.4 NC_005264.1 + 135745 0.75 0.433722
Target:  5'- cGACGCGcGGCUU-CUCGaaaGUCAUCGCGg -3'
miRNA:   3'- -UUGUGC-CCGAAuGAGCg--CAGUGGCGU- -5'
24570 5' -56.4 NC_005264.1 + 15141 0.74 0.470465
Target:  5'- cGACACGGGCaa--UCGCGUUGCgGCGa -3'
miRNA:   3'- -UUGUGCCCGaaugAGCGCAGUGgCGU- -5'
24570 5' -56.4 NC_005264.1 + 124181 0.73 0.499033
Target:  5'- uGCGCGGGCaccgUGCcgagucggugaCGCGUCACCGCc -3'
miRNA:   3'- uUGUGCCCGa---AUGa----------GCGCAGUGGCGu -5'
24570 5' -56.4 NC_005264.1 + 157871 0.73 0.499033
Target:  5'- uGCGCGGGCaccgUGCcgagucggugaCGCGUCACCGCc -3'
miRNA:   3'- uUGUGCCCGa---AUGa----------GCGCAGUGGCGu -5'
24570 5' -56.4 NC_005264.1 + 62925 0.73 0.538262
Target:  5'- cGCGCGGGCUUGCgcggcCGCaa-GCCGCGc -3'
miRNA:   3'- uUGUGCCCGAAUGa----GCGcagUGGCGU- -5'
24570 5' -56.4 NC_005264.1 + 65681 0.73 0.538262
Target:  5'- cACACGuGGCU--CUCGCGUCucuCCGUAg -3'
miRNA:   3'- uUGUGC-CCGAauGAGCGCAGu--GGCGU- -5'
24570 5' -56.4 NC_005264.1 + 53260 0.72 0.54824
Target:  5'- gGGCGCGugucuGGCUUGCUguccCGCGgCGCCGCAg -3'
miRNA:   3'- -UUGUGC-----CCGAAUGA----GCGCaGUGGCGU- -5'
24570 5' -56.4 NC_005264.1 + 92333 0.71 0.609092
Target:  5'- aAAUACGGGCUUuccccucccACUCG-GUCGCCGa- -3'
miRNA:   3'- -UUGUGCCCGAA---------UGAGCgCAGUGGCgu -5'
24570 5' -56.4 NC_005264.1 + 6161 0.71 0.619336
Target:  5'- cGCGCGGGCUguacaacaGCgaCGCGUCGCUGUu -3'
miRNA:   3'- uUGUGCCCGAa-------UGa-GCGCAGUGGCGu -5'
24570 5' -56.4 NC_005264.1 + 25537 0.7 0.660329
Target:  5'- uGCgAUGGGUgccgUACgccCGCGUCGCCGCc -3'
miRNA:   3'- uUG-UGCCCGa---AUGa--GCGCAGUGGCGu -5'
24570 5' -56.4 NC_005264.1 + 84323 0.7 0.670541
Target:  5'- gGGCACGGcGCgauggUUACUgGCcUCACCGCGu -3'
miRNA:   3'- -UUGUGCC-CG-----AAUGAgCGcAGUGGCGU- -5'
24570 5' -56.4 NC_005264.1 + 109844 0.7 0.670541
Target:  5'- uGGCACaguuuGGCgUGCUCGCG-CACCGCc -3'
miRNA:   3'- -UUGUGc----CCGaAUGAGCGCaGUGGCGu -5'
24570 5' -56.4 NC_005264.1 + 57161 0.7 0.700954
Target:  5'- gAGCGCGGGCgacgagggACUCGU--CGCCGCc -3'
miRNA:   3'- -UUGUGCCCGaa------UGAGCGcaGUGGCGu -5'
24570 5' -56.4 NC_005264.1 + 22974 0.69 0.720954
Target:  5'- uGACAgGGGCgugaGCa-GUGUCGCCGCGc -3'
miRNA:   3'- -UUGUgCCCGaa--UGagCGCAGUGGCGU- -5'
24570 5' -56.4 NC_005264.1 + 96335 0.69 0.730843
Target:  5'- cGGCGcCGGGCggggggcgUACUaCGUGUCGCCGgGg -3'
miRNA:   3'- -UUGU-GCCCGa-------AUGA-GCGCAGUGGCgU- -5'
24570 5' -56.4 NC_005264.1 + 24885 0.69 0.730843
Target:  5'- cGGCACGaGGCUucgcucuucguaUAgUCGCGUCGCUGgGg -3'
miRNA:   3'- -UUGUGC-CCGA------------AUgAGCGCAGUGGCgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.