miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24570 5' -56.4 NC_005264.1 + 60177 0.67 0.848285
Target:  5'- cACGCGGccguCUcGCUCGCGgccacCGCCGCGu -3'
miRNA:   3'- uUGUGCCc---GAaUGAGCGCa----GUGGCGU- -5'
24570 5' -56.4 NC_005264.1 + 142892 0.67 0.848285
Target:  5'- cGAUGCGGGCagGCgauggCGCGcCGCCGg- -3'
miRNA:   3'- -UUGUGCCCGaaUGa----GCGCaGUGGCgu -5'
24570 5' -56.4 NC_005264.1 + 42049 0.67 0.831949
Target:  5'- cGCGCGGaGCUggaaaaguUACUgCGCGUCaacguauacggaGCCGCGc -3'
miRNA:   3'- uUGUGCC-CGA--------AUGA-GCGCAG------------UGGCGU- -5'
24570 5' -56.4 NC_005264.1 + 129218 0.67 0.828592
Target:  5'- cGGCGCGGGCUacgggGCUCGUcgagggcucguuggGcucggcaUCGCCGCAc -3'
miRNA:   3'- -UUGUGCCCGAa----UGAGCG--------------C-------AGUGGCGU- -5'
24570 5' -56.4 NC_005264.1 + 152834 0.67 0.828592
Target:  5'- cGGCGCGGGCUacgggGCUCGUcgagggcucguuggGcucggcaUCGCCGCAc -3'
miRNA:   3'- -UUGUGCCCGAa----UGAGCG--------------C-------AGUGGCGU- -5'
24570 5' -56.4 NC_005264.1 + 22916 0.68 0.813138
Target:  5'- cAGCAcCGGGCagcagacacacGCUUGCG-CGCCGCAc -3'
miRNA:   3'- -UUGU-GCCCGaa---------UGAGCGCaGUGGCGU- -5'
24570 5' -56.4 NC_005264.1 + 68412 0.68 0.80963
Target:  5'- gAGgACGGGC-UGCUCGCucuggacuaccggCGCCGCGg -3'
miRNA:   3'- -UUgUGCCCGaAUGAGCGca-----------GUGGCGU- -5'
24570 5' -56.4 NC_005264.1 + 52868 0.68 0.806095
Target:  5'- --aGCGGGCagGCUCGCGgUACCuGCc -3'
miRNA:   3'- uugUGCCCGaaUGAGCGCaGUGG-CGu -5'
24570 5' -56.4 NC_005264.1 + 25111 0.68 0.79715
Target:  5'- cAGC-CGGGCgauaagaUCGCGUCACCcCAg -3'
miRNA:   3'- -UUGuGCCCGaaug---AGCGCAGUGGcGU- -5'
24570 5' -56.4 NC_005264.1 + 3726 0.68 0.788055
Target:  5'- --gGCGGGCUUcuccgacguCUCGCGaUCGCCGg- -3'
miRNA:   3'- uugUGCCCGAAu--------GAGCGC-AGUGGCgu -5'
24570 5' -56.4 NC_005264.1 + 123114 0.68 0.769451
Target:  5'- uGCACGGGCg-----GCGUCGCgGCAc -3'
miRNA:   3'- uUGUGCCCGaaugagCGCAGUGgCGU- -5'
24570 5' -56.4 NC_005264.1 + 158939 0.68 0.769451
Target:  5'- uGCACGGGCg-----GCGUCGCgGCAc -3'
miRNA:   3'- uUGUGCCCGaaugagCGCAGUGgCGU- -5'
24570 5' -56.4 NC_005264.1 + 78209 0.69 0.750356
Target:  5'- cGCACGGaGCgaaGCUCGCcGUCAUgcaCGCAa -3'
miRNA:   3'- uUGUGCC-CGaa-UGAGCG-CAGUG---GCGU- -5'
24570 5' -56.4 NC_005264.1 + 146947 0.69 0.750356
Target:  5'- cGCGCGGcGCUUGCUguugcCGgGUCcGCCGCc -3'
miRNA:   3'- uUGUGCC-CGAAUGA-----GCgCAG-UGGCGu -5'
24570 5' -56.4 NC_005264.1 + 75435 0.69 0.739671
Target:  5'- gAACACGGcGCgUGgUCGCGUuauacaagacggcCGCCGCGc -3'
miRNA:   3'- -UUGUGCC-CGaAUgAGCGCA-------------GUGGCGU- -5'
24570 5' -56.4 NC_005264.1 + 96335 0.69 0.730843
Target:  5'- cGGCGcCGGGCggggggcgUACUaCGUGUCGCCGgGg -3'
miRNA:   3'- -UUGU-GCCCGa-------AUGA-GCGCAGUGGCgU- -5'
24570 5' -56.4 NC_005264.1 + 24885 0.69 0.730843
Target:  5'- cGGCACGaGGCUucgcucuucguaUAgUCGCGUCGCUGgGg -3'
miRNA:   3'- -UUGUGC-CCGA------------AUgAGCGCAGUGGCgU- -5'
24570 5' -56.4 NC_005264.1 + 22974 0.69 0.720954
Target:  5'- uGACAgGGGCgugaGCa-GUGUCGCCGCGc -3'
miRNA:   3'- -UUGUgCCCGaa--UGagCGCAGUGGCGU- -5'
24570 5' -56.4 NC_005264.1 + 57161 0.7 0.700954
Target:  5'- gAGCGCGGGCgacgagggACUCGU--CGCCGCc -3'
miRNA:   3'- -UUGUGCCCGaa------UGAGCGcaGUGGCGu -5'
24570 5' -56.4 NC_005264.1 + 109844 0.7 0.670541
Target:  5'- uGGCACaguuuGGCgUGCUCGCG-CACCGCc -3'
miRNA:   3'- -UUGUGc----CCGaAUGAGCGCaGUGGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.