miRNA display CGI


Results 1 - 20 of 55 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24570 5' -56.4 NC_005264.1 + 3307 0.66 0.898948
Target:  5'- cGCGCGGGa----UCGCG-CGCCGUg -3'
miRNA:   3'- uUGUGCCCgaaugAGCGCaGUGGCGu -5'
24570 5' -56.4 NC_005264.1 + 3726 0.68 0.788055
Target:  5'- --gGCGGGCUUcuccgacguCUCGCGaUCGCCGg- -3'
miRNA:   3'- uugUGCCCGAAu--------GAGCGC-AGUGGCgu -5'
24570 5' -56.4 NC_005264.1 + 6161 0.71 0.619336
Target:  5'- cGCGCGGGCUguacaacaGCgaCGCGUCGCUGUu -3'
miRNA:   3'- uUGUGCCCGAa-------UGa-GCGCAGUGGCGu -5'
24570 5' -56.4 NC_005264.1 + 15141 0.74 0.470465
Target:  5'- cGACACGGGCaa--UCGCGUUGCgGCGa -3'
miRNA:   3'- -UUGUGCCCGaaugAGCGCAGUGgCGU- -5'
24570 5' -56.4 NC_005264.1 + 20254 0.67 0.863834
Target:  5'- --gACGGuGCUUGCUcgcuaCGCGggGCCGCGu -3'
miRNA:   3'- uugUGCC-CGAAUGA-----GCGCagUGGCGU- -5'
24570 5' -56.4 NC_005264.1 + 22916 0.68 0.813138
Target:  5'- cAGCAcCGGGCagcagacacacGCUUGCG-CGCCGCAc -3'
miRNA:   3'- -UUGU-GCCCGaa---------UGAGCGCaGUGGCGU- -5'
24570 5' -56.4 NC_005264.1 + 22974 0.69 0.720954
Target:  5'- uGACAgGGGCgugaGCa-GUGUCGCCGCGc -3'
miRNA:   3'- -UUGUgCCCGaa--UGagCGCAGUGGCGU- -5'
24570 5' -56.4 NC_005264.1 + 24885 0.69 0.730843
Target:  5'- cGGCACGaGGCUucgcucuucguaUAgUCGCGUCGCUGgGg -3'
miRNA:   3'- -UUGUGC-CCGA------------AUgAGCGCAGUGGCgU- -5'
24570 5' -56.4 NC_005264.1 + 25111 0.68 0.79715
Target:  5'- cAGC-CGGGCgauaagaUCGCGUCACCcCAg -3'
miRNA:   3'- -UUGuGCCCGaaug---AGCGCAGUGGcGU- -5'
24570 5' -56.4 NC_005264.1 + 25537 0.7 0.660329
Target:  5'- uGCgAUGGGUgccgUACgccCGCGUCGCCGCc -3'
miRNA:   3'- uUG-UGCCCGa---AUGa--GCGCAGUGGCGu -5'
24570 5' -56.4 NC_005264.1 + 28079 1.06 0.003756
Target:  5'- gAACACGGGCUUACUCGCGUCACCGCAa -3'
miRNA:   3'- -UUGUGCCCGAAUGAGCGCAGUGGCGU- -5'
24570 5' -56.4 NC_005264.1 + 33486 0.76 0.357558
Target:  5'- --uGCGGGCguggGCUUagGCGUCGCCGCGu -3'
miRNA:   3'- uugUGCCCGaa--UGAG--CGCAGUGGCGU- -5'
24570 5' -56.4 NC_005264.1 + 33599 0.76 0.349695
Target:  5'- -uCGCGGGCgUACUCGCccaacaUCACCGCGg -3'
miRNA:   3'- uuGUGCCCGaAUGAGCGc-----AGUGGCGU- -5'
24570 5' -56.4 NC_005264.1 + 42041 0.66 0.878545
Target:  5'- cGCACGcGGCcUAUccaaUCGCGUUGcCCGCGg -3'
miRNA:   3'- uUGUGC-CCGaAUG----AGCGCAGU-GGCGU- -5'
24570 5' -56.4 NC_005264.1 + 42049 0.67 0.831949
Target:  5'- cGCGCGGaGCUggaaaaguUACUgCGCGUCaacguauacggaGCCGCGc -3'
miRNA:   3'- uUGUGCC-CGA--------AUGA-GCGCAG------------UGGCGU- -5'
24570 5' -56.4 NC_005264.1 + 43858 0.67 0.848285
Target:  5'- cGCugGGGCcgGCaaagacgucuUCGuCGUCGCCGUu -3'
miRNA:   3'- uUGugCCCGaaUG----------AGC-GCAGUGGCGu -5'
24570 5' -56.4 NC_005264.1 + 52775 0.66 0.869081
Target:  5'- uACGCGGuCguggUACUCGCGUacugucgcuugccgCGCCGCu -3'
miRNA:   3'- uUGUGCCcGa---AUGAGCGCA--------------GUGGCGu -5'
24570 5' -56.4 NC_005264.1 + 52868 0.68 0.806095
Target:  5'- --aGCGGGCagGCUCGCGgUACCuGCc -3'
miRNA:   3'- uugUGCCCGaaUGAGCGCaGUGG-CGu -5'
24570 5' -56.4 NC_005264.1 + 53260 0.72 0.54824
Target:  5'- gGGCGCGugucuGGCUUGCUguccCGCGgCGCCGCAg -3'
miRNA:   3'- -UUGUGC-----CCGAAUGA----GCGCaGUGGCGU- -5'
24570 5' -56.4 NC_005264.1 + 55035 0.66 0.871298
Target:  5'- gGAUGCGGGCg-GCUCccaggucaCGUCGCCGUg -3'
miRNA:   3'- -UUGUGCCCGaaUGAGc-------GCAGUGGCGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.