miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24570 5' -56.4 NC_005264.1 + 28079 1.06 0.003756
Target:  5'- gAACACGGGCUUACUCGCGUCACCGCAa -3'
miRNA:   3'- -UUGUGCCCGAAUGAGCGCAGUGGCGU- -5'
24570 5' -56.4 NC_005264.1 + 52775 0.66 0.869081
Target:  5'- uACGCGGuCguggUACUCGCGUacugucgcuugccgCGCCGCu -3'
miRNA:   3'- uUGUGCCcGa---AUGAGCGCA--------------GUGGCGu -5'
24570 5' -56.4 NC_005264.1 + 124445 0.66 0.871298
Target:  5'- -gUACGcGGCaucuguCUCgGCGUCGCCGCu -3'
miRNA:   3'- uuGUGC-CCGaau---GAG-CGCAGUGGCGu -5'
24570 5' -56.4 NC_005264.1 + 3307 0.66 0.898948
Target:  5'- cGCGCGGGa----UCGCG-CGCCGUg -3'
miRNA:   3'- uUGUGCCCgaaugAGCGCaGUGGCGu -5'
24570 5' -56.4 NC_005264.1 + 65681 0.73 0.538262
Target:  5'- cACACGuGGCU--CUCGCGUCucuCCGUAg -3'
miRNA:   3'- uUGUGC-CCGAauGAGCGCAGu--GGCGU- -5'
24570 5' -56.4 NC_005264.1 + 53260 0.72 0.54824
Target:  5'- gGGCGCGugucuGGCUUGCUguccCGCGgCGCCGCAg -3'
miRNA:   3'- -UUGUGC-----CCGAAUGA----GCGCaGUGGCGU- -5'
24570 5' -56.4 NC_005264.1 + 25537 0.7 0.660329
Target:  5'- uGCgAUGGGUgccgUACgccCGCGUCGCCGCc -3'
miRNA:   3'- uUG-UGCCCGa---AUGa--GCGCAGUGGCGu -5'
24570 5' -56.4 NC_005264.1 + 84323 0.7 0.670541
Target:  5'- gGGCACGGcGCgauggUUACUgGCcUCACCGCGu -3'
miRNA:   3'- -UUGUGCC-CG-----AAUGAgCGcAGUGGCGU- -5'
24570 5' -56.4 NC_005264.1 + 123114 0.68 0.769451
Target:  5'- uGCACGGGCg-----GCGUCGCgGCAc -3'
miRNA:   3'- uUGUGCCCGaaugagCGCAGUGgCGU- -5'
24570 5' -56.4 NC_005264.1 + 43858 0.67 0.848285
Target:  5'- cGCugGGGCcgGCaaagacgucuUCGuCGUCGCCGUu -3'
miRNA:   3'- uUGugCCCGaaUG----------AGC-GCAGUGGCGu -5'
24570 5' -56.4 NC_005264.1 + 52868 0.68 0.806095
Target:  5'- --aGCGGGCagGCUCGCGgUACCuGCc -3'
miRNA:   3'- uugUGCCCGaaUGAGCGCaGUGG-CGu -5'
24570 5' -56.4 NC_005264.1 + 24885 0.69 0.730843
Target:  5'- cGGCACGaGGCUucgcucuucguaUAgUCGCGUCGCUGgGg -3'
miRNA:   3'- -UUGUGC-CCGA------------AUgAGCGCAGUGGCgU- -5'
24570 5' -56.4 NC_005264.1 + 15141 0.74 0.470465
Target:  5'- cGACACGGGCaa--UCGCGUUGCgGCGa -3'
miRNA:   3'- -UUGUGCCCGaaugAGCGCAGUGgCGU- -5'
24570 5' -56.4 NC_005264.1 + 68412 0.68 0.80963
Target:  5'- gAGgACGGGC-UGCUCGCucuggacuaccggCGCCGCGg -3'
miRNA:   3'- -UUgUGCCCGaAUGAGCGca-----------GUGGCGU- -5'
24570 5' -56.4 NC_005264.1 + 157871 0.73 0.499033
Target:  5'- uGCGCGGGCaccgUGCcgagucggugaCGCGUCACCGCc -3'
miRNA:   3'- uUGUGCCCGa---AUGa----------GCGCAGUGGCGu -5'
24570 5' -56.4 NC_005264.1 + 109844 0.7 0.670541
Target:  5'- uGGCACaguuuGGCgUGCUCGCG-CACCGCc -3'
miRNA:   3'- -UUGUGc----CCGaAUGAGCGCaGUGGCGu -5'
24570 5' -56.4 NC_005264.1 + 152834 0.67 0.828592
Target:  5'- cGGCGCGGGCUacgggGCUCGUcgagggcucguuggGcucggcaUCGCCGCAc -3'
miRNA:   3'- -UUGUGCCCGAa----UGAGCG--------------C-------AGUGGCGU- -5'
24570 5' -56.4 NC_005264.1 + 75117 0.66 0.869822
Target:  5'- gAGCugGGGCgcagucaaaugGCcgCGCGUCagaugggaaACCGCAc -3'
miRNA:   3'- -UUGugCCCGaa---------UGa-GCGCAG---------UGGCGU- -5'
24570 5' -56.4 NC_005264.1 + 62925 0.73 0.538262
Target:  5'- cGCGCGGGCUUGCgcggcCGCaa-GCCGCGc -3'
miRNA:   3'- uUGUGCCCGAAUGa----GCGcagUGGCGU- -5'
24570 5' -56.4 NC_005264.1 + 6161 0.71 0.619336
Target:  5'- cGCGCGGGCUguacaacaGCgaCGCGUCGCUGUu -3'
miRNA:   3'- uUGUGCCCGAa-------UGa-GCGCAGUGGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.