miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24571 3' -54.4 NC_005264.1 + 37070 0.66 0.971178
Target:  5'- aCCUgUCUCGCGcugaacuauuuGUuGGGcGUGCUG-CGGa -3'
miRNA:   3'- -GGA-AGAGCGC-----------CAuCCC-UACGACaGCC- -5'
24571 3' -54.4 NC_005264.1 + 53664 0.66 0.965144
Target:  5'- gCUUCUa-UGGUGGGGGaguucgGCcGUCGGa -3'
miRNA:   3'- gGAAGAgcGCCAUCCCUa-----CGaCAGCC- -5'
24571 3' -54.4 NC_005264.1 + 67709 0.66 0.958273
Target:  5'- aCCgUUCUgaaCGCuuGGUGGGGcgGCU-UCGGg -3'
miRNA:   3'- -GG-AAGA---GCG--CCAUCCCuaCGAcAGCC- -5'
24571 3' -54.4 NC_005264.1 + 787 0.67 0.952149
Target:  5'- -gUUCUUGCGGUAGcgcuccaguacggcuGGGUGCgcgGcCGGc -3'
miRNA:   3'- ggAAGAGCGCCAUC---------------CCUACGa--CaGCC- -5'
24571 3' -54.4 NC_005264.1 + 55655 0.67 0.946318
Target:  5'- aUUUCUCGCGGgcguaacagaAGGGAcgGUUG-CGGc -3'
miRNA:   3'- gGAAGAGCGCCa---------UCCCUa-CGACaGCC- -5'
24571 3' -54.4 NC_005264.1 + 50971 0.67 0.945884
Target:  5'- uCCUUCUCGCGGaacgGGucgccuuGGAUGCguugcccCGGg -3'
miRNA:   3'- -GGAAGAGCGCCa---UC-------CCUACGaca----GCC- -5'
24571 3' -54.4 NC_005264.1 + 145877 0.69 0.877018
Target:  5'- gCCUcuucugcUCUCGUGG--GGGAUGCUGgCGa -3'
miRNA:   3'- -GGA-------AGAGCGCCauCCCUACGACaGCc -5'
24571 3' -54.4 NC_005264.1 + 11645 0.7 0.863148
Target:  5'- --aUCagCGCGGcAGGGcUGCUGUCGu -3'
miRNA:   3'- ggaAGa-GCGCCaUCCCuACGACAGCc -5'
24571 3' -54.4 NC_005264.1 + 71711 0.76 0.521851
Target:  5'- gCUUUCUCGC-GUGGGGcUGCaGUCGGc -3'
miRNA:   3'- -GGAAGAGCGcCAUCCCuACGaCAGCC- -5'
24571 3' -54.4 NC_005264.1 + 29761 1.12 0.00352
Target:  5'- cCCUUCUCGCGGUAGGGAUGCUGUCGGc -3'
miRNA:   3'- -GGAAGAGCGCCAUCCCUACGACAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.